Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010126.1 Corchorus capsularis cultivar CVL-1 contig10147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70248

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5031--5304
136
2.0
136
97
0
512
43
17
14
25
1.86
6415--6454
20
2.0
20
100
0
80
35
20
15
30
1.93
6946--6972
10
2.7
10
100
0
54
55
0
29
14
1.40
6974--7012
2
19.0
2
86
5
51
43
5
2
48
1.38
8013--8051
20
2.0
20
85
10
53
28
5
2
64
1.28
8263--8385
22
5.5
22
72
7
104
37
10
15
36
1.82
8390--8720
22
14.9
22
69
13
133
38
9
15
36
1.81
8610--8673
25
2.8
24
83
11
80
45
7
12
34
1.71
8938--9039
21
5.1
20
68
17
59
38
7
19
34
1.81
8986--9061
23
3.4
23
87
5
102
39
6
17
36
1.75
8799--9113
22
14.5
22
71
17
157
39
9
16
35
1.80
8985--9292
22
13.7
23
69
13
103
36
10
16
36
1.83
9163--9250
45
2.0
45
84
4
115
32
11
17
38
1.85
10409--10477
29
2.3
31
80
9
72
33
20
13
33
1.91
11442--11692
126
2.0
126
99
0
493
33
14
17
34
1.90
11795--12045
126
2.0
126
97
0
475
33
13
17
35
1.89
11404--12107
353
2.0
353
98
0
1372
34
13
18
34
1.89
13333--13371
3
13.0
3
83
0
51
30
61
0
7
1.24
24062--24105
21
2.1
21
86
0
61
22
29
11
36
1.89
24103--24147
14
2.9
16
80
16
58
17
26
2
53
1.56
24151--24229
33
2.4
33
91
4
124
20
43
26
10
1.83
25687--25743
29
1.9
29
92
3
96
21
22
17
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26982--27062
42
1.9
43
85
7
112
24
18
25
30
1.98
27052--27092
20
2.0
21
90
4
66
36
19
19
24
1.95
27139--27163
2
12.5
2
100
0
50
48
0
0
52
1.00
29970--30194
23
10.0
23
84
3
235
17
8
23
50
1.73
35068--35092
1
25.0
1
100
0
50
100
0
0
0
0.00
35555--35593
20
2.0
20
84
0
51
53
0
41
5
1.23
38289--38564
137
2.0
137
100
0
552
28
25
18
27
1.98
40655--40693
20
2.0
20
84
0
51
53
0
41
5
1.23
57293--57317
5
5.0
5
100
0
50
40
40
0
20
1.52
57888--57918
6
5.2
6
100
0
62
32
19
48
0
1.49
61995--62198
104
2.0
105
97
1
383
23
16
20
39
1.91
64373--64399
1
27.0
1
100
0
54
0
0
0
100
0.00

Tables:   1

The End!