Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010128.1 Corchorus capsularis cultivar CVL-1 contig10149, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13319
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32


Found at i:9332 original size:59 final size:59

Alignment explanation


    Indices: 9237--9352  Score: 178
    Period size: 59  Copynumber: 2.0  Consensus size: 59

       9227 ATGAAAAGTC

                           ** *                                        
       9237 GTGACAATTGATTTCTTTTATGGTCTAACATATATTAGAAACAAAGTTCCAAAAAGACG
          1 GTGACAATTGATTTCGATCATGGTCTAACATATATTAGAAACAAAGTTCCAAAAAGACG

                                         * *            *            
       9296 GTGACAATTGATTTCGATCATGGTCTAACTTGTATTAGAAACAATGTTCCAAAAAGA
          1 GTGACAATTGATTTCGATCATGGTCTAACATATATTAGAAACAAAGTTCCAAAAAGA

       9353 TAGGAGTTGG


Statistics
Matches: 51,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  59   51  1.00

ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Consensus pattern (59 bp):   
GTGACAATTGATTTCGATCATGGTCTAACATATATTAGAAACAAAGTTCCAAAAAGACG
Done.