Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001013.1 Corchorus capsularis cultivar CVL-1 contig01013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17343
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:10492 original size:30 final size:29

Alignment explanation


    Indices: 10456--10530  Score: 89
    Period size: 29  Copynumber: 2.6  Consensus size: 29

      10446 TAGGTTGAGG

                                          
      10456 GGGCAAAATGTCTCAAAATTGAAGTTCATA
          1 GGGCAAAATGTC-CAAAATTGAAGTTCATA

                           *    *       *
      10486 GGGCAAAATGTCCAAGATTGTAGTTCA-G
          1 GGGCAAAATGTCCAAAATTGAAGTTCATA

                     *       
      10514 GGAGCAAAACGTCCAAA
          1 GG-GCAAAATGTCCAAA

      10531 CACTACAAAT


Statistics
Matches: 39,  Mismatches: 5, Indels: 3
        0.83            0.11        0.06

Matches are distributed among these distances:
  28    2  0.05
  29   25  0.64
  30   12  0.31

ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21


Consensus pattern (29 bp):   
GGGCAAAATGTCCAAAATTGAAGTTCATA

Done.