Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010132.1 Corchorus capsularis cultivar CVL-1 contig10153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1510
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:382 original size:10 final size:10

Alignment explanation


    Indices: 367--392  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        357 AGTTGCTGCC

                      
        367 AAATTCCAGA
          1 AAATTCCAGA

                      
        377 AAATTCCAGA
          1 AAATTCCAGA

                  
        387 AAATTC
          1 AAATTC

        393 TAGAGTCCTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.50, C:0.19, G:0.08, T:0.23


Consensus pattern (10 bp):   
AAATTCCAGA

Found at i:1329 original size:6 final size:6

Alignment explanation


    Indices: 1318--1345  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1308 TATAATCTGC

                                            
       1318 TTTAGA TTTAGA TTTAGA TTTAGA TTTA
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTTA

       1346 TTTTGCTTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54


Consensus pattern (6 bp):   
TTTAGA

Done.