Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010134.1 Corchorus capsularis cultivar CVL-1 contig10155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61639

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
485--512
6
4.7
6
100
0
56
32
0
14
53
1.41
4526--4627
30
3.4
30
75
15
95
19
13
28
38
1.90
4610--4820
53
3.8
53
86
6
251
19
14
27
37
1.91
4579--4821
53
4.5
54
83
8
244
20
14
27
37
1.92
5063--5095
2
16.5
2
100
0
66
51
0
0
48
1.00
5757--5802
20
2.3
20
88
0
65
41
15
17
26
1.88
7179--7620
35
12.7
35
90
0
670
40
10
16
32
1.83
7411--7469
17
3.4
17
73
13
66
44
13
6
35
1.71
8743--8792
25
2.0
25
88
0
73
56
4
0
40
1.18
8766--8799
17
2.0
17
88
0
50
64
5
0
29
1.17
8885--8909
13
1.9
13
100
0
50
40
20
8
32
1.81
9738--9768
2
15.5
2
100
0
62
51
0
0
48
1.00
15701--15761
23
2.6
23
84
10
79
24
0
24
50
1.49
15702--15746
8
5.9
8
89
7
67
22
0
24
53
1.46
15710--15746
15
2.5
15
100
0
74
18
0
27
54
1.44
23389--23466
30
2.5
31
76
19
83
20
12
25
41
1.88
23444--23634
56
3.5
55
80
11
214
20
14
26
39
1.90
28388--28544
74
2.1
74
92
2
262
21
29
8
40
1.82
28551--28589
20
1.9
21
94
5
71
30
0
10
58
1.31
30753--30779
1
27.0
1
100
0
54
0
0
0
100
0.00
33060--33094
2
17.5
2
100
0
70
51
0
48
0
1.00
37113--37153
18
2.3
18
91
0
64
21
7
29
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39886--39937
4
12.8
4
77
18
54
46
1
3
48
1.31
44396--44428
16
2.1
15
94
5
57
69
0
30
0
0.88
45416--45450
17
2.0
18
94
5
63
34
11
28
25
1.91
47020--47122
3
34.7
3
94
1
145
33
4
0
61
1.24
51220--51704
167
2.9
165
83
2
628
29
16
16
37
1.91
51959--51988
9
3.3
9
100
0
60
33
10
0
56
1.32
55929--55990
27
2.3
27
80
8
72
17
20
27
33
1.96
58663--58706
10
4.4
10
86
8
54
22
9
0
68
1.18
59398--59763
178
2.0
181
88
5
542
33
16
13
36
1.88
59763--59823
31
2.0
30
90
6
97
62
9
14
13
1.55
60235--60571
186
1.8
185
90
1
541
36
16
11
35
1.86
60574--60635
30
2.0
31
87
6
90
61
9
14
14
1.57
61074--61135
31
2.1
30
90
6
99
62
9
14
12
1.53

Tables:   1

The End!