Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010143.1 Corchorus capsularis cultivar CVL-1 contig10164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35192

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1995--2028
2
17.0
2
100
0
68
50
0
0
50
1.00
2175--2215
6
6.8
6
97
0
73
17
12
34
36
1.87
5140--5176
3
12.0
3
94
5
65
64
0
0
35
0.94
9311--9340
13
2.2
14
94
5
53
50
33
0
16
1.46
9330--9364
15
2.3
15
90
0
52
42
31
8
17
1.79
10420--10470
26
2.0
26
100
0
102
35
7
27
29
1.85
15683--15712
12
2.5
12
94
0
51
36
0
40
23
1.55
20184--20250
30
2.2
30
91
2
107
50
5
17
25
1.69
21496--21558
27
2.2
28
94
5
110
28
30
9
31
1.89
30435--30464
2
15.0
2
100
0
60
50
0
0
50
1.00
31380--31439
3
20.0
3
100
0
120
33
0
0
66
0.92

Tables:   1

The End!