Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010146.1 Corchorus capsularis cultivar CVL-1 contig10167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10324

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
825--893
27
2.5
28
84
11
81
50
23
10
15
1.74
1215--1447
47
4.9
47
87
1
313
35
20
24
20
1.96
1241--1447
95
2.2
95
90
1
317
36
19
24
19
1.95
1505--1724
69
3.2
70
80
5
259
27
19
29
23
1.98
1967--2027
29
2.1
29
96
0
113
31
9
19
39
1.84
2275--2381
50
2.2
50
88
5
155
36
13
15
34
1.87
3010--3064
20
2.8
21
76
20
64
14
21
0
63
1.30
3006--3066
27
2.3
26
83
5
70
13
24
0
62
1.31
3056--3100
11
4.0
11
80
13
56
0
17
0
82
0.68
3054--3095
22
1.9
22
95
0
75
0
16
0
83
0.65
3055--3092
11
3.6
10
86
13
58
0
13
0
86
0.56
3442--3558
44
2.6
45
89
5
175
39
18
5
35
1.76
3573--3642
11
6.5
10
73
14
50
1
20
1
77
0.93
3576--3646
13
5.1
13
71
15
61
1
21
1
76
0.95

Tables:   1

The End!