Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001015.1 Corchorus capsularis cultivar CVL-1 contig01015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2340
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:2306 original size:2 final size:2

Alignment explanation


    Indices: 2299--2323  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       2289 AACTAACAGA

                                                 
       2299 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       2324 CCCAACGGTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.