Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010153.1 Corchorus capsularis cultivar CVL-1 contig10174, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20066

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341--383
12
3.5
12
93
6
77
34
16
23
25
1.95
543--567
9
2.8
9
100
0
50
12
0
0
88
0.53
1398--1433
10
3.6
10
92
0
63
30
5
22
41
1.76
1395--1433
20
2.0
20
100
0
78
30
5
20
43
1.73
1595--1660
34
1.9
34
87
6
98
31
10
34
22
1.88
12388--12424
1
37.0
1
94
0
56
94
0
0
5
0.30
13559--13592
9
3.8
9
100
0
68
17
0
0
82
0.67
13558--13596
9
4.1
10
93
6
64
20
0
0
79
0.73
13648--13715
26
2.6
26
84
9
93
35
1
8
54
1.41
13724--13783
25
2.5
25
86
5
79
43
0
20
36
1.52
14404--14490
11
7.5
11
68
23
54
18
11
3
66
1.37
14473--14518
16
3.1
16
70
23
55
8
15
0
76
1.02
14639--14685
23
2.0
23
83
4
58
27
2
34
36
1.69
16470--16877
183
2.2
182
81
6
432
30
16
16
36
1.92
19240--19275
17
2.1
18
94
5
65
27
30
8
33
1.86

Tables:   1

The End!