Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010155.1 Corchorus capsularis cultivar CVL-1 contig10176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38599

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1683--1732
23
2.2
22
83
16
59
44
8
4
44
1.52
4014--4194
90
2.0
90
97
0
344
29
18
6
45
1.75
5073--5280
7
31.3
7
65
19
81
16
21
3
59
1.51
5043--5289
47
5.3
46
83
7
275
17
20
3
58
1.53
5089--5147
20
3.0
20
80
9
61
13
22
1
62
1.39
4990--5284
140
2.2
138
81
9
345
16
22
4
56
1.57
5156--5236
12
6.7
12
72
21
62
16
20
3
59
1.52
5258--5553
21
13.8
21
74
13
223
19
19
6
54
1.66
5258--5553
42
6.9
43
81
5
323
19
19
6
54
1.66
7034--7085
27
1.9
27
100
0
104
17
28
7
46
1.75
7767--7810
24
1.9
22
82
17
54
25
6
15
52
1.68
7789--7828
18
2.2
19
86
4
55
30
5
20
45
1.72
9140--9472
50
6.5
50
80
5
344
24
28
11
35
1.90
10002--10370
67
5.6
67
74
5
248
26
23
12
37
1.90
9989--10350
198
1.8
198
86
1
519
26
23
12
37
1.90
11615--11662
7
6.7
7
77
13
53
2
16
0
81
0.79
12458--12493
15
2.4
15
95
0
63
41
11
22
25
1.86
16054--16085
2
16.5
2
93
6
57
50
0
0
50
1.00
21229--21273
23
2.0
23
95
0
81
28
22
37
11
1.88
22007--22035
2
14.5
2
100
0
58
51
0
0
48
1.00
24531--24582
15
3.5
14
76
10
50
36
1
0
61
1.07
27048--27073
11
2.4
11
100
0
52
65
7
0
26
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33779--33916
66
2.1
66
85
4
181
23
15
19
42
1.89
33849--34365
87
6.0
85
69
14
274
23
17
17
41
1.90
34319--34360
21
1.9
22
90
9
68
14
19
26
40
1.89
36000--36067
31
2.2
31
89
0
100
19
22
26
32
1.97
36070--36157
31
2.8
31
96
0
167
17
22
25
35
1.95
37624--37759
16
8.6
16
87
5
152
24
14
30
30
1.95
37635--37759
48
2.6
47
86
3
178
24
14
30
30
1.95
37624--37758
64
2.1
63
91
1
216
24
14
30
30
1.95
38161--38251
46
2.0
46
84
0
119
25
24
34
16
1.95

Tables:   1

The End!