Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010158.1 Corchorus capsularis cultivar CVL-1 contig10179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16876
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:3849 original size:3 final size:3

Alignment explanation


    Indices: 3841--3869  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       3831 ACCAATCTAG

                                                  
       3841 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT

       3870 ATATATCACT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATC

Found at i:14698 original size:20 final size:21

Alignment explanation


    Indices: 14673--14713  Score: 66
    Period size: 20  Copynumber: 2.0  Consensus size: 21

      14663 TTCCATTAGC

                      *          
      14673 AAATTACTTAGC-CCGTTAAT
          1 AAATTACTTAACACCGTTAAT

                                 
      14693 AAATTACTTAACACCGTTAAT
          1 AAATTACTTAACACCGTTAAT

      14714 TTTACCCACT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   11  0.58
  21    8  0.42

ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34


Consensus pattern (21 bp):   
AAATTACTTAACACCGTTAAT

Done.