Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010162.1 Corchorus capsularis cultivar CVL-1 contig10183, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72068

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2992--3027
11
3.3
11
92
7
56
44
2
5
47
1.41
3162--3195
2
18.0
2
88
11
54
52
0
0
47
1.00
4010--4092
31
2.7
31
84
0
121
21
21
15
40
1.90
8236--8622
156
2.5
157
77
8
403
32
16
19
32
1.94
13025--13069
3
15.0
3
100
0
90
33
0
0
66
0.92
15164--15212
20
2.5
20
100
0
98
24
16
0
59
1.37
15165--15244
20
4.2
20
78
15
80
28
11
2
57
1.46
15229--15255
12
2.2
12
100
0
54
37
0
14
48
1.45
16824--16852
14
2.1
14
93
6
51
20
0
13
65
1.26
19114--19184
25
2.7
28
71
22
64
43
2
1
52
1.24
23993--24021
3
10.0
3
92
7
51
34
0
0
65
0.93
26234--26264
1
31.0
1
100
0
62
0
0
0
100
0.00
40994--41027
18
1.9
18
88
5
52
61
0
0
38
0.96
41000--41037
11
3.5
11
85
10
51
57
0
0
42
0.98
50703--50742
21
1.9
21
89
0
62
35
7
22
35
1.82
51907--51940
16
2.2
16
89
5
52
58
8
2
29
1.43
53221--53256
19
1.9
18
88
5
54
33
22
2
41
1.68
53420--53458
20
1.9
21
84
5
53
56
2
20
20
1.54
54399--54433
14
2.4
14
90
4
52
28
8
34
28
1.87
58755--58983
85
2.7
87
87
2
356
44
5
16
34
1.71
62443--62489
18
2.9
15
84
15
58
78
6
14
0
0.93
62446--62487
13
3.3
12
84
15
50
80
4
14
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62448--62489
16
2.7
16
89
10
61
80
4
14
0
0.86
62575--62613
14
2.7
14
84
4
51
41
10
15
33
1.81
62958--63004
5
9.2
5
86
4
67
76
0
19
4
0.95
63204--63280
37
2.1
37
90
2
120
35
11
12
40
1.80
64273--64320
22
2.2
22
85
7
62
47
6
33
12
1.66
64430--65056
35
17.9
35
90
2
965
30
13
22
33
1.92
66276--66500
85
2.6
87
88
2
357
44
5
16
34
1.71

Tables:   1

The End!