Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010165.1 Corchorus capsularis cultivar CVL-1 contig10186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52281

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--52
14
2.6
13
87
12
54
2
61
0
36
1.11
755--791
2
18.0
2
94
5
65
48
0
2
48
1.15
14042--14087
25
1.9
23
82
8
56
43
4
10
41
1.59
16458--16489
4
8.0
4
92
0
55
0
21
3
75
0.95
18891--18966
37
2.1
37
94
0
134
40
28
9
21
1.84
19541--19931
195
2.0
195
95
0
710
37
15
14
32
1.88
21157--21200
14
3.2
14
74
6
54
9
27
6
56
1.55
21373--21420
22
2.2
22
96
0
87
50
8
18
22
1.74
28004--28062
25
2.4
25
91
5
95
35
23
0
40
1.55
28082--28130
11
4.1
11
76
19
53
53
10
2
34
1.47
28072--28139
26
2.6
26
93
4
111
52
10
1
35
1.44
28072--28115
15
3.2
15
75
24
60
52
11
0
36
1.38
28072--28139
15
5.1
14
70
26
58
52
10
1
35
1.44
28244--28342
33
3.0
33
77
14
105
15
34
34
16
1.90
28367--28408
11
3.7
11
83
3
57
23
0
7
69
1.13
28535--28579
21
2.1
21
91
0
72
33
8
40
17
1.81
28859--28944
45
1.9
45
95
0
154
33
17
23
25
1.96
29898--29960
32
2.0
32
100
0
126
31
9
22
36
1.86
35005--35058
19
2.9
19
75
8
58
53
5
24
16
1.64
40824--40865
21
2.0
21
85
0
57
16
26
7
50
1.71
43151--43175
7
3.6
7
100
0
50
76
0
12
12
1.04
43250--43301
21
2.5
21
87
9
79
76
9
7
5
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43252--43288
12
3.3
12
82
17
53
78
5
8
8
1.09
43596--43628
12
2.6
13
85
9
50
12
0
18
69
1.18
43976--44037
16
3.9
16
80
0
79
50
32
11
6
1.64
44184--44256
32
2.6
26
74
25
76
38
36
8
16
1.79
44192--44256
32
2.0
32
96
0
121
36
36
9
16
1.81
44195--44255
15
3.9
15
75
10
59
37
36
8
18
1.80
45862--47407
199
7.8
199
82
3
1753
35
17
13
33
1.89

Tables:   1

The End!