genome.fa.s10168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010168.1 Corchorus capsularis cultivar CVL-1 contig10189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79496

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7989--8032	23	2.0	22	95	4	79	68	9	0	22	1.18
7931--8246	159	2.0	157	96	1	578	36	18	13	32	1.89
8148--8190	22	2.0	22	95	0	77	69	11	0	18	1.17
16077--16126	21	2.4	21	86	0	73	28	20	12	40	1.87
16274--16307	16	2.1	16	88	5	50	82	0	14	2	0.79
16548--16580	16	2.0	17	94	5	59	63	6	24	6	1.40
16554--16621	17	4.1	17	83	7	77	58	4	25	11	1.51
16573--16628	17	3.3	16	80	9	58	55	1	28	14	1.49
17590--17657	26	2.6	26	95	0	118	52	11	1	33	1.47
17590--17657	15	5.1	15	70	26	62	52	11	1	33	1.47
17710--17750	12	3.7	11	84	12	57	75	0	0	24	0.80
17712--17741	12	2.5	12	100	0	60	80	0	0	20	0.72
17706--17756	22	2.3	22	82	0	66	68	0	0	31	0.90
17906--17952	22	2.1	22	100	0	94	27	4	42	25	1.73
18344--18420	31	2.5	31	97	0	145	33	25	16	23	1.96
21132--21167	19	1.9	18	88	5	54	41	5	2	50	1.40
21141--21172	16	1.9	17	93	6	57	43	6	0	50	1.27
21365--21484	59	2.0	59	86	0	168	24	28	20	27	1.99
24316--24480	33	5.0	33	92	0	258	33	21	14	30	1.93
24316--24480	66	2.5	66	93	0	285	33	21	14	30	1.93
28160--28460	154	2.0	153	89	2	460	22	24	15	36	1.94
36160--36215	24	2.3	24	96	0	103	21	26	7	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40047--40083	19	2.0	19	89	5	58	43	21	0	35	1.53
45414--45470	2	28.5	2	100	0	114	0	0	49	50	1.00
45712--45791	41	2.0	40	82	7	99	31	11	18	38	1.86
45707--45885	99	1.9	95	84	12	240	27	10	22	39	1.87
46935--47068	65	2.1	64	90	1	205	16	18	15	49	1.80
50146--50204	14	4.5	13	74	16	50	28	1	8	61	1.35
52448--52474	2	13.5	2	100	0	54	51	0	0	48	1.00
54047--54081	2	17.5	2	87	0	52	51	5	0	42	1.25
54367--54482	58	2.0	59	93	1	198	22	7	19	50	1.73
54596--54634	20	2.0	20	85	10	53	48	0	10	41	1.37
55096--55145	20	2.5	19	81	15	57	54	2	2	42	1.23
57858--57899	18	2.3	18	95	0	75	16	16	4	61	1.50
65403--65429	13	2.1	13	100	0	54	44	14	0	40	1.46
68084--68120	19	1.9	19	89	10	58	29	5	0	64	1.15
68286--68450	22	7.3	22	75	10	118	31	10	20	38	1.86
68331--68390	25	2.6	22	86	7	75	33	15	16	35	1.90
68633--68873	22	10.9	22	75	7	121	42	9	12	34	1.77
68699--68846	66	2.2	66	79	2	154	41	10	14	34	1.79
68982--69304	22	14.9	22	73	11	188	41	8	15	34	1.78
68982--69304	44	7.4	44	72	11	211	41	8	15	34	1.78
69079--69308	60	3.6	61	76	13	173	42	8	15	33	1.77
69181--69287	23	4.7	23	84	2	110	40	9	14	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69271--69317	22	2.1	22	88	0	67	34	8	14	42	1.77
69473--69529	22	2.6	22	80	5	62	42	10	10	36	1.74
69662--69688	14	1.9	14	100	0	54	59	0	0	40	0.98
69959--69995	18	2.1	18	100	0	74	21	21	5	51	1.68
71067--71168	48	2.2	47	96	3	188	30	1	8	58	1.39
72087--72369	139	2.0	139	100	0	566	35	21	17	25	1.95
73204--73242	19	2.0	21	85	10	55	56	0	7	35	1.28
73883--73935	24	2.2	24	79	0	61	20	64	0	15	1.29
74892--75308	216	1.9	215	92	1	694	31	9	16	43	1.79
78660--78723	31	2.1	31	100	0	128	48	12	3	35	1.57

Tables:   1

The End!