Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010171.1 Corchorus capsularis cultivar CVL-1 contig10192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10236

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
719--785
32
2.1
31
81
13
75
31
14
2
50
1.58
2009--2046
19
2.0
20
85
15
53
28
5
2
63
1.30
2211--2395
22
8.3
22
73
9
124
34
9
18
37
1.83
2212--2341
66
2.0
66
83
3
163
36
11
16
35
1.85
2213--2388
44
4.0
44
81
5
169
35
9
17
37
1.83
2473--2564
22
4.2
22
70
13
64
35
7
17
39
1.78
2594--2821
22
10.4
23
71
16
119
42
9
14
33
1.78
2630--2693
21
2.8
24
86
11
89
43
9
12
34
1.75
2682--2848
88
1.9
88
81
7
205
43
10
13
32
1.77
2926--2977
20
2.6
20
90
0
86
44
9
17
28
1.80
2926--3458
22
24.6
22
71
13
214
39
9
15
35
1.80
5856--5901
2
22.5
2
87
12
67
47
0
4
47
1.21
9095--9150
26
2.2
26
96
0
103
12
25
33
28
1.92
9095--9368
32
8.7
32
84
10
329
13
27
30
28
1.94
9124--9368
64
3.8
64
93
2
404
14
27
29
28
1.95
9653--9868
115
1.9
115
87
5
319
25
7
17
49
1.72

Tables:   1

The End!