Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010172.1 Corchorus capsularis cultivar CVL-1 contig10193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42744

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
538--584
3
15.7
3
100
0
94
65
0
0
34
0.93
2747--2834
24
3.7
24
80
8
99
35
19
13
31
1.91
3463--3498
19
1.9
18
88
5
54
33
8
5
52
1.55
3526--3611
45
1.9
45
85
4
120
38
17
11
32
1.86
3660--3763
23
4.7
20
79
15
73
38
13
10
37
1.79
3701--3785
23
3.7
23
84
1
100
37
14
7
41
1.73
3662--3785
45
2.8
45
80
8
128
37
13
9
38
1.78
3398--3967
22
26.6
22
69
11
231
35
15
10
38
1.81
3916--3967
20
2.6
20
93
0
86
26
17
13
42
1.86
4046--4468
22
19.0
22
69
13
120
34
16
9
40
1.80
4520--4683
22
7.4
22
74
11
93
39
17
9
34
1.81
4534--4682
44
3.3
43
82
7
165
36
16
10
36
1.82
4554--4685
66
2.0
66
80
5
151
37
16
9
36
1.82
4849--4886
19
2.0
20
85
15
53
63
2
5
28
1.30
8531--8621
39
2.3
39
85
9
114
24
23
10
41
1.86
9408--9437
1
30.0
1
100
0
60
0
0
0
100
0.00
9807--9946
74
1.9
74
95
0
253
40
8
29
21
1.83
15530--15588
21
2.8
21
85
10
68
23
18
13
44
1.86
24137--24323
39
4.7
39
84
5
225
41
27
10
20
1.85
24144--24342
81
2.5
81
84
8
239
38
27
10
23
1.87
33371--33397
14
1.9
14
100
0
54
22
11
0
66
1.22
33419--33461
20
2.1
20
86
4
59
41
6
9
41
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39319--39591
71
3.9
69
81
7
248
47
7
18
27
1.75
39319--39592
34
7.7
35
77
9
261
47
7
18
27
1.74
39707--39868
36
4.5
36
87
3
220
46
11
14
27
1.79
39926--40114
11
16.5
11
84
7
243
57
10
22
9
1.61
39927--40114
45
4.1
45
85
6
222
56
10
22
9
1.62
39924--40114
69
2.8
69
88
6
291
57
10
22
9
1.60
39924--40107
92
2.0
92
91
2
298
58
10
22
9
1.59
40117--40630
36
14.5
36
84
3
616
41
10
22
25
1.86
40117--40633
70
7.3
71
87
4
636
41
10
23
25
1.86
40117--40633
106
4.9
106
84
4
666
41
10
23
25
1.86

Tables:   1

The End!