genome.fa.s10173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010173.1 Corchorus capsularis cultivar CVL-1 contig10194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70576

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11120--11179	11	5.7	11	76	13	56	38	18	3	40	1.67
15812--15843	17	1.9	17	93	6	57	34	0	9	56	1.32
15869--15908	19	2.2	18	86	8	55	22	15	7	55	1.65
16205--16235	6	5.3	6	96	3	55	51	12	0	35	1.40
17548--17607	11	5.7	11	76	13	56	38	18	1	41	1.60
18984--19210	39	5.7	39	80	8	219	39	28	10	21	1.86
18985--19210	78	2.8	80	88	4	296	39	28	10	21	1.86
28405--28584	36	5.2	35	80	11	178	27	21	10	40	1.86
28426--28601	32	5.3	31	74	17	122	28	22	9	39	1.86
28405--28601	68	2.9	65	75	16	177	27	22	9	40	1.85
28414--28606	104	1.9	102	83	10	252	26	23	9	40	1.85
28576--28713	37	3.7	37	91	0	213	25	24	6	43	1.78
28724--28826	36	2.9	34	74	8	98	27	13	10	48	1.75
28817--29042	41	5.6	40	90	3	353	23	20	9	46	1.80
28817--29042	81	2.8	81	90	4	357	23	20	9	46	1.80
29046--29888	37	22.6	37	89	2	1127	25	18	9	46	1.79
39055--39098	18	2.4	19	96	3	81	63	2	9	25	1.35
39462--39504	16	2.6	16	88	3	59	55	9	0	34	1.32
40588--41222	35	18.0	35	82	9	672	32	19	17	30	1.94
41187--41571	54	7.1	54	85	3	481	31	18	18	31	1.96
41205--41571	161	2.3	161	86	4	490	31	18	19	31	1.96
41568--42240	34	19.9	34	86	4	898	40	23	20	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41942--41999	26	2.3	26	96	3	109	41	25	20	12	1.87
53797--53844	9	5.4	9	82	5	62	2	14	0	83	0.74
53797--53844	17	2.7	18	87	3	62	2	14	0	83	0.74
54163--54218	28	2.0	28	86	10	80	12	23	1	62	1.39
70491--70545	23	2.3	23	78	9	58	65	12	7	14	1.46

Tables:   1

The End!