Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010175.1 Corchorus capsularis cultivar CVL-1 contig10196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70548

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--262
25
3.4
25
90
3
127
36
0
28
34
1.58
7332--7368
6
6.2
6
100
0
74
0
32
0
67
0.91
13456--13494
19
2.1
19
100
0
78
48
15
15
20
1.81
16295--16338
23
1.9
23
85
0
61
38
20
9
31
1.84
16922--16953
2
16.0
2
100
0
64
50
0
0
50
1.00
19395--19430
8
4.5
8
85
0
54
8
5
0
86
0.72
20174--20264
45
2.0
46
91
2
148
31
19
23
25
1.98
20678--21155
165
2.9
165
81
5
561
29
15
15
39
1.88
21955--21999
23
2.0
23
81
0
54
26
15
15
42
1.87
22909--22946
14
2.6
14
91
4
58
0
60
0
39
0.97
28218--28263
21
2.1
22
88
8
67
50
4
0
45
1.21
28901--28944
2
21.5
2
95
4
79
50
2
0
47
1.13
28963--29021
31
1.9
31
92
0
100
33
16
3
45
1.64
29781--29993
109
2.0
103
85
5
282
34
11
8
45
1.70
30168--30233
31
2.1
31
86
5
89
28
21
4
45
1.71
30706--30845
22
6.3
22
76
9
122
32
9
20
38
1.84
30910--31006
22
4.4
22
70
14
65
32
10
19
37
1.86
31043--31297
22
11.6
22
72
10
121
42
9
14
33
1.78
31380--31935
22
25.5
22
69
10
232
39
9
15
35
1.81
31566--31667
23
4.5
23
78
8
102
38
7
14
39
1.75
31566--31669
46
2.3
45
85
6
131
38
8
14
38
1.77
31719--31804
45
1.9
45
83
4
111
33
11
16
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39424--39466
19
2.3
19
96
4
79
6
6
20
65
1.41
43958--43992
11
3.2
11
83
0
52
77
17
5
0
0.96
48291--48334
4
11.5
4
81
18
58
77
2
20
0
0.88
60677--60727
3
17.0
3
100
0
102
66
0
0
33
0.92
63833--63872
20
2.0
20
85
0
53
57
7
20
15
1.61
64438--64465
2
14.0
2
100
0
56
50
0
0
50
1.00
65271--65350
31
2.6
31
97
0
151
33
16
31
18
1.93
65927--65963
17
2.2
17
90
0
56
29
13
35
21
1.92
68080--68131
22
2.4
22
81
9
63
38
11
5
44
1.65
68146--68684
22
24.7
22
68
12
154
35
15
10
38
1.81
68442--68537
45
2.1
46
83
7
117
35
16
8
39
1.79
68785--69015
22
10.5
22
73
10
159
33
14
9
42
1.78
69039--69178
22
6.4
21
71
14
88
35
19
8
36
1.82
69745--69809
30
2.1
31
88
2
96
46
4
18
30
1.69

Tables:   1

The End!