Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010178.1 Corchorus capsularis cultivar CVL-1 contig10199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25639

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
390--423
10
3.5
10
88
4
52
91
0
8
0
0.43
390--425
18
2.1
17
89
5
54
88
0
11
0
0.50
1437--1478
20
2.0
21
86
4
59
42
16
14
26
1.86
7440--7465
2
13.0
2
100
0
52
50
0
0
50
1.00
9464--10025
155
3.6
154
80
5
591
31
15
19
33
1.93
10394--10480
45
1.9
45
88
0
129
37
20
17
24
1.93
13628--13658
5
6.2
5
92
0
53
77
0
3
19
0.90
14080--14130
21
2.5
21
81
12
63
25
3
21
49
1.67
16271--16304
12
2.8
12
95
0
59
35
29
8
26
1.87
18373--18809
218
2.0
218
98
0
847
37
10
20
32
1.86
20156--20205
24
2.0
25
88
3
75
30
4
14
52
1.59
25495--25617
2
66.0
2
68
22
72
42
0
4
52
1.28
25500--25609
19
5.7
19
68
22
61
41
0
5
52
1.24
25489--25612
17
7.0
17
75
13
92
41
0
4
53
1.28

Tables:   1

The End!