Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010180.1 Corchorus capsularis cultivar CVL-1 contig10201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40260

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13071--13107
17
2.2
17
90
0
56
24
37
10
27
1.88
26808--26841
17
2.0
17
88
11
52
23
14
8
52
1.69
31834--31933
27
3.8
26
76
10
105
21
12
23
44
1.85
31834--31931
24
3.8
25
77
9
90
20
12
23
43
1.85
34904--34976
28
2.6
28
91
0
110
15
12
28
43
1.82
35634--35685
26
2.0
26
100
0
104
38
15
34
11
1.83
35635--35693
26
2.3
26
93
0
100
40
16
32
10
1.82
38366--38400
16
2.1
17
89
5
54
82
0
17
0
0.66
39258--39344
40
2.4
36
82
16
115
52
3
21
21
1.61
39276--39407
40
3.5
39
82
13
127
56
3
20
19
1.55
39345--39690
36
9.3
36
70
22
125
54
3
22
19
1.60
39389--39464
32
2.3
33
91
6
120
55
5
17
22
1.62
39437--39499
26
2.4
26
89
2
99
53
3
15
26
1.57
39501--39648
7
20.7
7
73
15
117
57
2
25
15
1.49
39505--39648
29
5.0
28
75
13
100
57
2
25
15
1.49
39504--39613
22
5.0
22
82
10
129
58
1
25
14
1.47
39504--39620
43
2.7
43
84
9
132
57
2
24
15
1.51
39531--39691
35
4.6
34
84
9
191
54
3
25
16
1.57
39680--39736
15
3.9
15
75
13
64
57
5
15
21
1.57
39679--39867
22
8.6
21
74
12
134
55
5
18
20
1.63
39671--39858
29
6.7
28
68
19
83
55
5
19
19
1.62
39690--39758
23
2.7
23
80
13
66
59
5
15
18
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39715--39872
44
3.6
45
82
9
184
55
5
19
19
1.63
39747--39872
22
5.8
22
76
12
143
53
5
19
20
1.64

Tables:   1

The End!