Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010182.1 Corchorus capsularis cultivar CVL-1 contig10203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53153

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
807--850
14
3.3
13
81
12
54
38
6
15
38
1.75
3573--4023
68
6.6
68
83
4
514
25
27
17
29
1.97
5036--5074
20
2.0
20
89
0
60
28
10
20
41
1.85
8074--8506
22
20.4
22
70
15
83
52
4
21
21
1.63
8152--8558
22
19.1
22
73
8
188
53
4
21
21
1.64
8077--8557
127
3.8
126
93
2
795
52
4
21
22
1.64
8236--8418
20
8.8
20
66
21
74
55
4
20
19
1.61
8507--8544
20
1.9
19
89
5
58
50
5
18
26
1.68
8667--8787
38
3.2
37
82
8
120
58
2
23
15
1.49
8705--8787
38
2.2
37
86
2
121
59
2
21
16
1.49
8735--8833
27
3.6
27
78
6
119
57
2
21
19
1.50
8765--8854
27
3.3
27
79
13
78
54
2
22
21
1.56
8856--8924
26
2.4
28
76
16
79
53
2
20
23
1.59
10909--10935
13
2.1
13
100
0
54
44
14
0
40
1.46
11045--11086
19
2.3
18
84
8
57
61
0
4
33
1.17
11050--11086
19
2.0
19
89
5
58
64
0
2
32
1.07
18046--18086
20
2.0
20
100
0
82
26
24
9
39
1.86
18267--18320
26
2.1
26
100
0
108
14
14
20
50
1.78
18301--18367
34
2.0
34
100
0
134
29
28
11
29
1.92
18303--18379
34
2.3
34
90
4
120
29
28
9
32
1.88
18399--18437
19
2.1
19
100
0
78
35
28
10
25
1.89
21489--22054
155
3.7
155
88
3
766
30
15
19
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23172--23213
15
2.8
16
82
7
52
4
19
0
76
0.96
23139--23225
42
2.0
43
82
10
108
5
22
0
71
1.07
24278--24382
54
2.0
51
92
5
174
33
10
20
36
1.86
28392--28432
22
1.9
21
85
5
55
14
46
4
34
1.66
29355--29400
12
3.8
12
86
11
58
36
0
0
63
0.95
29352--29409
16
3.6
16
72
21
50
34
0
3
62
1.12
33411--33486
5
14.8
5
75
18
68
78
0
19
1
0.81
33411--33488
22
3.8
21
82
15
92
79
0
19
1
0.80
33410--33486
14
5.4
14
73
14
68
79
0
19
1
0.81
33555--33632
31
2.5
30
77
4
84
32
30
19
17
1.95
44235--44272
18
2.1
18
95
0
67
47
15
5
31
1.68
44349--44439
43
2.1
43
93
0
155
50
20
13
15
1.77
44353--44423
21
3.3
21
66
3
61
53
18
14
14
1.73
44350--44423
22
3.4
23
64
19
59
54
18
13
13
1.71
50443--50493
24
2.1
24
96
0
93
60
15
9
13
1.58
52651--52684
5
6.6
5
86
6
50
0
14
0
85
0.60
52969--53009
21
1.9
22
85
5
57
29
0
4
65
1.13

Tables:   1

The End!