Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010184.1 Corchorus capsularis cultivar CVL-1 contig10205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19789

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30--90
25
2.4
25
80
5
68
39
9
1
49
1.46
21--119
26
3.8
25
75
16
76
39
6
5
49
1.49
709--753
16
2.7
16
89
6
63
48
0
0
51
1.00
3078--3144
26
2.6
26
83
2
82
8
29
0
61
1.27
4153--4184
2
16.0
2
100
0
64
50
0
0
50
1.00
4798--4864
26
2.7
26
83
4
75
13
4
23
58
1.54
10402--10467
21
3.1
22
69
26
61
28
13
12
45
1.80
10382--10467
42
2.0
45
86
9
124
29
13
12
44
1.81
12165--12263
32
3.1
32
85
2
137
41
18
20
20
1.91
13381--13418
20
1.9
20
88
0
58
42
0
0
57
0.98
13393--13477
26
3.3
24
77
12
71
35
0
7
57
1.26
13392--13484
14
6.8
14
76
14
61
35
0
7
56
1.27
13571--13772
18
11.8
18
64
20
76
29
1
8
59
1.39
13642--13718
26
3.0
25
77
5
73
31
0
10
58
1.32
14180--14225
24
2.0
24
91
4
76
43
0
6
50
1.28
19624--19671
15
3.5
15
78
21
68
54
10
0
35
1.35
19624--19744
26
4.8
26
76
9
126
54
9
0
35
1.38
19662--19750
18
4.9
18
68
18
51
55
7
1
35
1.37
19734--19787
25
2.1
26
86
3
74
64
5
1
27
1.26
19734--19788
26
2.1
26
83
6
67
65
5
1
27
1.25

Tables:   1

The End!