Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010187.1 Corchorus capsularis cultivar CVL-1 contig10208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76111

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161--200
20
2.0
20
100
0
80
50
10
20
20
1.76
190--428
92
2.6
92
97
0
451
37
16
20
25
1.93
3427--3487
30
2.0
30
87
6
88
34
16
4
44
1.69
7187--7338
26
5.8
28
69
18
80
50
1
0
48
1.14
7213--7332
18
6.9
17
69
17
68
50
0
0
48
1.06
7170--7338
51
3.3
52
70
15
131
50
1
0
47
1.16
7214--7256
15
2.7
15
89
10
59
51
0
0
48
1.00
7200--7292
44
2.1
44
80
4
98
48
2
0
49
1.13
7161--7318
53
3.1
52
70
13
150
47
1
0
50
1.17
13355--13393
9
4.3
9
83
0
51
53
0
2
43
1.14
15569--15612
15
2.9
15
89
0
61
43
22
22
11
1.85
15570--15617
15
3.2
15
87
0
60
39
22
22
14
1.91
31409--31453
6
7.5
6
100
0
90
31
0
15
53
1.43
34134--34158
10
2.5
10
100
0
50
48
20
8
24
1.76
35086--35112
6
4.5
6
100
0
54
29
0
14
55
1.40
36694--36733
15
2.7
15
84
3
55
37
17
10
35
1.83
37981--38043
21
3.0
21
70
23
60
9
50
28
11
1.69
40498--40522
10
2.5
10
100
0
50
48
20
8
24
1.76
41449--41487
6
6.5
6
100
0
78
30
0
15
53
1.42
53228--53350
32
3.8
32
91
0
201
52
30
13
4
1.61
53229--53350
16
7.6
16
78
0
118
51
30
13
4
1.61
53498--53605
32
3.4
31
85
2
153
39
34
8
17
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53510--53590
15
5.2
15
71
8
72
41
29
6
22
1.78
53498--53637
63
2.2
63
82
2
156
40
35
8
15
1.78
53690--54140
225
2.0
225
100
0
902
39
15
17
27
1.89
61373--61435
30
2.1
30
93
0
108
6
25
25
42
1.78
63117--63185
29
2.4
29
82
0
84
20
13
27
39
1.89
64389--64436
22
2.2
22
100
0
96
29
20
4
45
1.70
70034--70174
33
4.3
32
76
7
113
9
24
41
24
1.84
70154--70195
21
2.0
21
85
0
57
14
30
30
23
1.94
75546--75580
9
3.8
9
92
3
52
14
0
0
85
0.59
75653--75686
8
4.1
8
85
7
50
23
2
14
58
1.50

Tables:   1

The End!