Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010188.1 Corchorus capsularis cultivar CVL-1 contig10209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100097

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
441--578
33
4.2
32
79
7
116
10
27
40
21
1.85
560--599
21
1.9
21
89
0
62
17
35
25
22
1.95
13876--14026
76
2.0
76
96
0
275
29
21
13
35
1.91
34899--35208
41
7.5
41
77
7
290
22
10
26
40
1.86
34908--35212
83
3.7
83
91
3
488
22
10
27
39
1.87
34908--35211
165
1.8
165
94
0
545
22
10
27
39
1.87
35274--35345
31
2.4
31
83
6
85
33
11
22
33
1.89
37540--37662
35
3.5
35
82
1
131
27
13
30
28
1.94
48596--48657
26
2.3
27
86
2
90
8
16
32
43
1.77
51840--51911
32
2.2
32
87
2
99
47
0
26
26
1.53
51946--51986
22
1.9
21
85
5
55
14
41
14
29
1.86
68973--68997
13
1.9
13
100
0
50
56
0
0
44
0.99
71977--72012
18
1.9
19
94
5
65
2
41
0
55
1.14
73936--73969
2
17.5
2
87
6
52
50
2
0
47
1.16
75466--75539
27
2.7
27
87
0
94
16
12
25
45
1.81
75861--75888
14
2.0
14
100
0
56
21
14
14
50
1.78
76076--76113
20
2.0
20
89
5
60
31
10
18
39
1.85
76974--77000
12
2.2
12
100
0
54
33
37
0
29
1.58
79517--80162
22
29.9
21
72
16
266
54
5
20
19
1.63
79613--79690
7
10.7
7
73
10
50
58
0
20
20
1.39
79613--79654
15
2.9
15
76
16
52
61
0
16
21
1.34
79636--79801
36
4.5
36
70
16
115
56
1
22
19
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79732--79809
14
5.3
14
71
13
59
53
1
23
21
1.53
79827--80051
21
10.7
19
76
12
99
54
6
20
18
1.66
79884--80139
91
2.9
90
78
12
224
54
6
20
17
1.65
80699--80738
16
2.5
15
88
11
62
20
10
7
62
1.50
80999--81080
27
3.1
26
70
10
67
36
7
6
50
1.55
81726--81798
30
2.4
30
88
0
101
39
21
26
12
1.89
81746--81805
30
2.0
30
100
0
120
33
20
30
16
1.94
83550--83589
17
2.3
17
91
4
62
10
7
5
77
1.11
92150--92179
15
2.0
15
93
0
51
23
20
6
50
1.71
93755--93836
41
2.0
41
92
0
137
34
17
15
32
1.91
94119--94159
22
2.0
22
85
9
59
2
17
0
80
0.82
94121--94167
11
4.4
11
84
12
53
2
21
0
76
0.89
95162--95243
41
2.0
41
95
0
146
35
15
15
32
1.90
95525--95587
10
6.1
10
77
3
63
4
15
0
79
0.90
96876--96945
17
4.3
17
72
18
60
8
14
0
77
0.99
96884--96944
24
2.5
24
82
7
79
9
13
0
77
1.00
96877--96949
32
2.4
30
86
11
96
8
13
0
78
0.97
96915--96946
9
3.7
9
95
4
57
9
9
0
81
0.88
99070--99123
10
5.1
10
74
12
54
5
22
44
27
1.75

Tables:   1

The End!