Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010189.1 Corchorus capsularis cultivar CVL-1 contig10210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30845
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Found at i:4194 original size:8 final size:8
Alignment explanation
Indices: 4181--4211 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
4171 GGTCGAAATT
4181 TTTTTTTA
1 TTTTTTTA
4189 TTTTTTTA
1 TTTTTTTA
4197 TTTTTTTA
1 TTTTTTTA
*
4205 TATTTTT
1 TTTTTTT
4212 CGATAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTTTA
Found at i:4312 original size:8 final size:8
Alignment explanation
Indices: 4284--4317 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
4274 GAATCGGCTA
4284 TGAATTTT
1 TGAATTTT
*
4292 TGAAGTTTC
1 TGAA-TTTT
4301 TGAATTTT
1 TGAATTTT
4309 TGAATTTT
1 TGAATTTT
4317 T
1 T
4318 CAAGAAGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59
Consensus pattern (8 bp):
TGAATTTT
Found at i:5308 original size:33 final size:30
Alignment explanation
Indices: 5241--5352 Score: 100
Period size: 30 Copynumber: 3.6 Consensus size: 30
5231 AGGATCAAAA
* * * * * *
5241 GGCCGGTCTTGTCCGGATGGCCTAATCAAT
1 GGCCGGTCGTGGCCGGTTGTCCCAATCGAT
5271 GGCCGGTCGTGGCCGGTTGGTGCGCCAATCGAT
1 GGCCGGTCGTGGCCGGTT-GT-C-CCAATCGAT
*
5304 GGCCGGTTGTGGCCGGTTGTCCC-ATGCGAT
1 GGCCGGTCGTGGCCGGTTGTCCCAAT-CGAT
5334 GGCCGGTCATGTGGCCGGT
1 GGCCGGTC--GTGGCCGGT
5353 GTTGCGCGTC
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
29 2 0.03
30 28 0.41
31 2 0.03
32 12 0.18
33 24 0.35
ACGTcount: A:0.10, C:0.27, G:0.39, T:0.24
Consensus pattern (30 bp):
GGCCGGTCGTGGCCGGTTGTCCCAATCGAT
Found at i:5336 original size:30 final size:33
Alignment explanation
Indices: 5264--5352 Score: 105
Period size: 33 Copynumber: 2.7 Consensus size: 33
5254 CGGATGGCCT
* *
5264 AATCAATGGCCGGTCGTGGCCGGTTGGTGCGCC
1 AATCGATGGCCGGTTGTGGCCGGTTGGTGCGCC
5297 AATCGATGGCCGGTTGTGGCCGGTT-GT-C-CC
1 AATCGATGGCCGGTTGTGGCCGGTTGGTGCGCC
5327 -ATGCGATGGCCGGTCATGTGGCCGGT
1 AAT-CGATGGCCGGT--TGTGGCCGGT
5353 GTTGCGCGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
29 2 0.04
30 13 0.25
31 1 0.02
32 12 0.24
33 23 0.45
ACGTcount: A:0.11, C:0.26, G:0.39, T:0.24
Consensus pattern (33 bp):
AATCGATGGCCGGTTGTGGCCGGTTGGTGCGCC
Found at i:11757 original size:34 final size:35
Alignment explanation
Indices: 11709--11785 Score: 129
Period size: 34 Copynumber: 2.2 Consensus size: 35
11699 ACCTTCTGAC
*
11709 CTTGTCCATTTATGCTCATCGCTTCCTTTGGTTTAG
1 CTTGT-CATTTATGCTCACCGCTTCCTTTGGTTTAG
11745 CTTGTCA-TTATGCTCACCGCTTCCTTTGGTTTAG
1 CTTGTCATTTATGCTCACCGCTTCCTTTGGTTTAG
11779 CTTGTCA
1 CTTGTCA
11786 CTAATTCTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 33 0.82
35 2 0.05
36 5 0.12
ACGTcount: A:0.12, C:0.26, G:0.17, T:0.45
Consensus pattern (35 bp):
CTTGTCATTTATGCTCACCGCTTCCTTTGGTTTAG
Found at i:14039 original size:53 final size:53
Alignment explanation
Indices: 13957--14519 Score: 842
Period size: 53 Copynumber: 10.5 Consensus size: 53
13947 TAGTGAACAC
* * * *
13957 AGGTTTAATTAAGAGTAATTAACCTAAGCAGCAAAAGGGGAAAATCAGCAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
* *
14010 AGGTTTAATTCAGAATAATTAACCCAAGCAGTAAAAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
*
14063 AGGTTTAATTCAGAGTATTTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
* *
14116 AGGTTTAATTCTGAGTAATTAACCTAAGTAGTAAAAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
14169 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
* *
14222 AGGTTTAATTCCGAGTAATTAACCTAAGCTTGTAAAGAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGC-AGTAAA-AGGAGAAAATCAGTAAAT
* *
14277 AGGTTTAATTCAGAGAAATTAACCTAAGCAGTAAAGAGGAGAAAATCAGAAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAA-AGGAGAAAATCAGTAAAT
*
14331 AGGTTTAATTCCGAGTAATTAACCTAAGCAAGTAAAGAGGAGAAAATCAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGC-AGTAAA-AGGAGAAAATCAGTAAAT
* *
14386 AGGTTTGATTCAGAGTAATTAACCTAAGCAGTAAAAAGGAGAAAATTAGTAAAT
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGT-AAAAGGAGAAAATCAGTAAAT
* * * *
14440 AGGTTTAATTCAGAGTAATTAACCTAAGAAGTAAAAGCAAAAAAAT-AGTAAAC
1 AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAG-GAGAAAATCAGTAAAT
* *
14493 AAGTTTAATTC-GAAGTAATTAAGCTAA
1 AGGTTTAATTCAG-AGTAATTAACCTAA
14520 AAAGAGTAGA
Statistics
Matches: 471, Mismatches: 33, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
52 1 0.00
53 260 0.55
54 111 0.24
55 99 0.21
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.25
Consensus pattern (53 bp):
AGGTTTAATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAAATCAGTAAAT
Found at i:14658 original size:9 final size:9
Alignment explanation
Indices: 14644--14723 Score: 67
Period size: 9 Copynumber: 8.9 Consensus size: 9
14634 GAAATGAAGT
14644 AGAAGTAAA
1 AGAAGTAAA
14653 AGAAGTAAA
1 AGAAGTAAA
*
14662 AGAGGGTAAA
1 AGA-AGTAAA
*
14672 AGGAGTAAA
1 AGAAGTAAA
*
14681 AG-AGTAATC
1 AGAAGTAA-A
*
14690 AGTA-TAAA
1 AGAAGTAAA
14698 AGAGAGTAAA
1 AGA-AGTAAA
*
14708 AGGAGTAAA
1 AGAAGTAAA
14717 AG-AGTAA
1 AGAAGTAA
14724 TCAGAGTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
8 12 0.20
9 33 0.56
10 14 0.24
ACGTcount: A:0.57, C:0.01, G:0.28, T:0.14
Consensus pattern (9 bp):
AGAAGTAAA
Found at i:14672 original size:19 final size:18
Alignment explanation
Indices: 14648--14747 Score: 84
Period size: 19 Copynumber: 5.6 Consensus size: 18
14638 TGAAGTAGAA
*
14648 GTAAAAGAAGTAAAAGAGG
1 GTAAAAGGAGTAAAAGA-G
14667 GTAAAAGGAGTAAAAGA-
1 GTAAAAGGAGTAAAAGAG
* *
14684 GTAATCAGTA-TAAAAGAG
1 GTAA-AAGGAGTAAAAGAG
14702 AGTAAAAGGAGTAAAAGA-
1 -GTAAAAGGAGTAAAAGAG
*
14720 GTAATCA-GAGTAAAA-AGG
1 GTAA-AAGGAGTAAAAGA-G
14738 GTAAAAGGAG
1 GTAAAAGGAG
14748 GAGTAATAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
16 1 0.02
17 24 0.36
18 14 0.21
19 27 0.41
ACGTcount: A:0.55, C:0.02, G:0.29, T:0.14
Consensus pattern (18 bp):
GTAAAAGGAGTAAAAGAG
Found at i:14698 original size:36 final size:36
Alignment explanation
Indices: 14656--14747 Score: 152
Period size: 36 Copynumber: 2.6 Consensus size: 36
14646 AAGTAAAAGA
14656 AGTAAAAGAGGGTAAAAGGAGTAAAAGAGTAATCAG
1 AGTAAAAGAGGGTAAAAGGAGTAAAAGAGTAATCAG
*
14692 TA-TAAAAGAGAGTAAAAGGAGTAAAAGAGTAATCAG
1 -AGTAAAAGAGGGTAAAAGGAGTAAAAGAGTAATCAG
14728 AGTAAAA-AGGGTAAAAGGAG
1 AGTAAAAGAGGGTAAAAGGAG
14748 GAGTAATAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
35 13 0.25
36 38 0.73
37 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.29, T:0.14
Consensus pattern (36 bp):
AGTAAAAGAGGGTAAAAGGAGTAAAAGAGTAATCAG
Found at i:15054 original size:59 final size:58
Alignment explanation
Indices: 14975--15155 Score: 224
Period size: 58 Copynumber: 3.1 Consensus size: 58
14965 AAAAGGAGTA
*
14975 AAAGGAGTAAACAATAGTAATTATCTTAATTCAGAGTAATTAAGTTAATCAAGAAGTG
1 AAAGGAGTAAACAATAGTAATTAGCTTAATTCAGAGTAATTAAGTTAATCAAGAAGTG
* * ** *
15033 AAAGGAAGTAACCAGTAGTAATTAGCTTAATTCAGAACAATTAAGTTTATCAAGATA-T-
1 AAAGG-AGTAAACAATAGTAATTAGCTTAATTCAGAGTAATTAAGTTAATCAAGA-AGTG
* *
15091 AAACGGAGCAAACAATAGTAATTAGCTTAATTCAGAGTAATCAAGTTAA-CTAAGAAGTAG
1 AAA-GGAGTAAACAATAGTAATTAGCTTAATTCAGAGTAATTAAGTTAATC-AAGAAGT-G
15151 AAAGG
1 AAAGG
15156 CTATCAATAG
Statistics
Matches: 103, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
57 2 0.02
58 49 0.48
59 48 0.47
60 4 0.04
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.27
Consensus pattern (58 bp):
AAAGGAGTAAACAATAGTAATTAGCTTAATTCAGAGTAATTAAGTTAATCAAGAAGTG
Found at i:26653 original size:113 final size:111
Alignment explanation
Indices: 26449--26751 Score: 428
Period size: 113 Copynumber: 2.7 Consensus size: 111
26439 TTCCGAAGAA
** * * * **
26449 TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGAGTCAAACGCCACTAAATAATGGCGTCTGGG
1 TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGG-CCCAAACGCCGCTAAATAGTGGCGTTTATG
*
26514 ATCCCAGACGCCGCCATACTTATTTTTTTCGGAGAAATGCAAATTGAG
65 -TCCCAGACGCCACCATACTTATTTTTTTCGGAGAAATGCAAATTGAG
*
26562 TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCAAAACGCCGCCAAATAGTGGCGTTTATG
1 TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCC-AAACGCCGCTAAATAGTGGCGTTTATG
26627 TCCCAGACGCCACCATACTTATTTTTTTTCGGAGAAATGCAAATTGAG
65 TCCCAGACGCCACCATACTTA-TTTTTTTCGGAGAAATGCAAATTGAG
* * *
26675 TAAAAATGAAGCCTAACAAAAAGTGGCATCTAGGCCCTAAACGCCGCTAAATAGTGGCGTCTTAT
1 TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCC-AAACGCCGCTAAATAGTGGCGT-TTAT
26740 GTCACC-GACGCC
64 GTC-CCAGACGCC
26752 GCTAAATGGT
Statistics
Matches: 172, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
112 21 0.12
113 136 0.79
114 13 0.08
115 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (111 bp):
TAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCAAACGCCGCTAAATAGTGGCGTTTATGT
CCCAGACGCCACCATACTTATTTTTTTCGGAGAAATGCAAATTGAG
Found at i:26752 original size:32 final size:32
Alignment explanation
Indices: 26715--26785 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
26705 TAGGCCCTAA
*
26715 ACGCCGCTAAATAGTGGCGTCTTATGTCACCG
1 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
*
26747 ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
1 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
26779 ACGCCGC
1 ACGCCGC
26786 CATACTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.23
Consensus pattern (32 bp):
ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
Found at i:26865 original size:145 final size:145
Alignment explanation
Indices: 26602--27075 Score: 851
Period size: 145 Copynumber: 3.3 Consensus size: 145
26592 TAGGCCCAAA
* * * *
26602 ACGCCGCCAAATAGTGGCGT-TTATGTCCCAGACGCCACCATACTTATTTTTTTTCGGAGAAATG
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTA-TTTTTTTCGGAGAAATG
* * *
26666 CAAATTGAGTAAAAATGAAGCCTAACAAAAAGTGGCATCTAGGCCCTAAACGCCGCTAAATAGTG
65 CAAATTGAGTAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTG
*
26731 GCGTCTTATGTCACCG
130 GCGTCTTATGTCACAG
26747 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTATTTTTTTCGGAGAAATGC
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTATTTTTTTCGGAGAAATGC
26812 AAATTGAGTAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTGG
66 AAATTGAGTAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTGG
26877 CGTCTTATGTCACAG
131 CGTCTTATGTCACAG
26892 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTATTTTTTTCGGAGAAATGC
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTATTTTTTTCGGAGAAATGC
*
26957 AAATTGAGTAAAAATGAAGCCTAATAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTGG
66 AAATTGAGTAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTGG
27022 CGTCTTATGTCACAG
131 CGTCTTATGTCACAG
27037 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGC
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGC
27076 TAAATGGTGG
Statistics
Matches: 319, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
145 295 0.92
146 24 0.08
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (145 bp):
ACGCCGCTAAATGGTGGCGTCTTATGTCACAGACGCCGCCATACTTATTTTTTTCGGAGAAATGC
AAATTGAGTAAAAATGAAGCCTAACAAATAGCGGCGTCTAGGCCCTAAACGCCGCTAAATAGTGG
CGTCTTATGTCACAG
Found at i:26879 original size:31 final size:31
Alignment explanation
Indices: 26837--26930 Score: 91
Period size: 32 Copynumber: 3.0 Consensus size: 31
26827 GAAGCCTAAC
* *
26837 AAATAGCGGCGTCTA-GGCCCTAAACGCCGCT
1 AAATAGTGGCGTCTATGGCAC-AAACGCCGCT
* *
26868 AAATAGTGGCGTCTTATGTCACAGACGCCGCT
1 AAATAGTGGCGTC-TATGGCACAAACGCCGCT
* * *
26900 AAATGGTGGCGTCTTATGTCACAGACGCCGC
1 AAATAGTGGCGTC-TATGGCACAAACGCCGC
26931 CATACTTATT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
31 12 0.21
32 41 0.73
33 3 0.05
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (31 bp):
AAATAGTGGCGTCTATGGCACAAACGCCGCT
Found at i:26901 original size:32 final size:32
Alignment explanation
Indices: 26860--26930 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
26850 TAGGCCCTAA
26860 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
1 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
*
26892 ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
1 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
26924 ACGCCGC
1 ACGCCGC
26931 CATACTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (32 bp):
ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
Found at i:27046 original size:32 final size:32
Alignment explanation
Indices: 27005--27090 Score: 163
Period size: 32 Copynumber: 2.7 Consensus size: 32
26995 TAGGCCCTAA
*
27005 ACGCCGCTAAATAGTGGCGTCTTATGTCACAG
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
27037 ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
1 ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
27069 ACGCCGCTAAATGGTGGCGTCT
1 ACGCCGCTAAATGGTGGCGTCT
27091 GTGATCCAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (32 bp):
ACGCCGCTAAATGGTGGCGTCTTATGTCACAG
Found at i:28264 original size:30 final size:30
Alignment explanation
Indices: 28230--28310 Score: 98
Period size: 29 Copynumber: 2.7 Consensus size: 30
28220 GAAATTTTAT
28230 ATTCTAGGTTTTGTTCATAAATTCTGGG-AA
1 ATTCTAGGTTTTGTTCATAAATT-TGGGAAA
28260 ATTCTAGGTTTTGTTGCGAT--A-TTGGGAAA
1 ATTCTAGGTTTTGTT-C-ATAAATTTGGGAAA
*
28289 ATTCTGGGTTTTGTTCATAAAT
1 ATTCTAGGTTTTGTTCATAAAT
28311 CTTCCTACTG
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
27 2 0.05
28 5 0.11
29 18 0.41
30 16 0.36
31 1 0.02
32 2 0.05
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (30 bp):
ATTCTAGGTTTTGTTCATAAATTTGGGAAA
Found at i:28496 original size:17 final size:19
Alignment explanation
Indices: 28457--28496 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
28447 ATGTCTGTCA
28457 GTTTTCTATCTCTTTCTCT
1 GTTTTCTATCTCTTTCTCT
*
28476 -TTTTC-ATTTCTTT-TCT
1 GTTTTCTATCTCTTTCTCT
28492 GTTTT
1 GTTTT
28497 GCCATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 3 0.16
17 11 0.58
18 5 0.26
ACGTcount: A:0.05, C:0.20, G:0.05, T:0.70
Consensus pattern (19 bp):
GTTTTCTATCTCTTTCTCT
Done.