Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001019.1 Corchorus capsularis cultivar CVL-1 contig01019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 996

Length: 1661
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36


Found at i:1265 original size:20 final size:20

Alignment explanation


    Indices: 1217--1258  Score: 63
    Period size: 19  Copynumber: 2.2  Consensus size: 20

       1207 TTAGATATGA

                                
       1217 AAATTGAT--AATGCTTACT
          1 AAATTGATAAAATGCTTACT

                                
       1235 AAATTGATAAAATGC-TACT
          1 AAATTGATAAAATGCTTACT

                 
       1254 AAATT
          1 AAATT

       1259 TATTAAAGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  18    8  0.36
  19    9  0.41
  20    5  0.23

ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36


Consensus pattern (20 bp):   
AAATTGATAAAATGCTTACT
Done.