Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010190.1 Corchorus capsularis cultivar CVL-1 contig10211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67078

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
302--404
29
3.7
29
83
8
144
26
31
25
17
1.97
4936--4993
27
2.1
27
83
0
71
32
31
1
34
1.68
7575--7622
11
4.8
10
82
17
55
45
2
20
31
1.63
8964--9000
19
1.9
19
94
0
65
27
2
8
62
1.37
24327--25215
35
25.6
35
85
5
1125
39
10
18
32
1.84
24344--24404
21
3.2
20
65
26
51
40
8
19
31
1.81
31040--31103
33
1.9
33
87
6
94
40
21
4
32
1.74
31080--31142
33
1.9
33
86
0
90
44
20
9
25
1.82
34872--34957
30
2.9
30
92
0
145
33
17
25
23
1.96
63072--63447
39
9.6
39
73
8
264
40
15
17
25
1.89
63065--63443
117
3.2
116
93
1
632
40
16
17
25
1.90
62944--63431
78
6.3
78
74
7
337
40
16
17
25
1.90
63411--64255
190
4.4
190
91
1
1275
42
15
19
22
1.88
63411--64255
63
13.3
63
85
3
1036
42
15
19
22
1.88
63411--64255
127
6.7
126
85
2
1052
42
15
19
22
1.88
64325--64709
168
2.3
169
92
0
628
34
16
19
29
1.94
64716--64898
70
2.6
70
92
0
285
27
15
28
27
1.96

Tables:   1

The End!