genome.fa.s10192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010192.1 Corchorus capsularis cultivar CVL-1 contig10213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83215

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99--140	12	3.4	12	90	6	66	16	0	9	73	1.08
426--463	13	3.0	13	84	3	51	42	13	7	36	1.73
473--520	20	2.3	21	89	3	80	35	18	8	37	1.81
8977--9019	13	3.3	13	81	9	52	16	6	18	58	1.60
11852--11897	24	1.9	24	95	0	83	4	23	10	60	1.47
11855--11907	24	2.2	24	83	6	63	5	28	9	56	1.54
50464--50531	33	2.1	33	86	8	95	33	25	25	16	1.95
51062--51119	29	2.0	29	100	0	116	6	37	0	55	1.27
51240--51265	13	2.0	13	100	0	52	0	38	0	61	0.96
51243--51436	84	2.3	84	95	1	347	17	30	4	47	1.67
53169--53285	27	4.3	27	91	0	180	21	41	16	20	1.90
55487--55516	2	15.0	2	100	0	60	50	0	0	50	1.00
55702--55764	32	2.0	32	90	0	99	38	26	17	17	1.92
55815--55963	26	5.8	26	91	3	223	26	29	29	14	1.95
55919--56115	88	2.2	88	81	5	218	29	21	21	27	1.98
56161--56206	24	1.9	24	86	0	65	23	28	23	23	2.00
56506--56560	19	2.7	21	78	18	62	40	3	18	38	1.68
57642--57677	19	1.9	18	88	5	54	41	2	22	33	1.68
67138--67242	33	3.2	32	81	5	129	24	9	20	45	1.80
67268--67376	33	3.3	33	96	0	191	26	10	18	44	1.81
67754--67813	30	2.0	30	90	6	95	28	20	30	21	1.98
68988--69063	32	2.3	32	80	8	84	11	50	28	9	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70987--71041	19	2.7	21	78	18	62	40	3	18	38	1.68
72375--72422	20	2.3	21	89	3	71	20	6	6	66	1.36

Tables:   1

The End!