Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010194.1 Corchorus capsularis cultivar CVL-1 contig10215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2150
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36


Found at i:2054 original size:12 final size:13

Alignment explanation


    Indices: 2013--2057  Score: 74
    Period size: 13  Copynumber: 3.5  Consensus size: 13

       2003 AATTATTGTT

                         
       2013 TGCTTTATTAATC
          1 TGCTTTATTAATC

                        *
       2026 TGCTTTATTAATT
          1 TGCTTTATTAATC

                         
       2039 TGCTTTA-TAATC
          1 TGCTTTATTAATC

                   
       2051 TGCTTTA
          1 TGCTTTA

       2058 GATTTAGATT


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  12   11  0.37
  13   19  0.63

ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56


Consensus pattern (13 bp):   
TGCTTTATTAATC

Found at i:2065 original size:6 final size:6

Alignment explanation


    Indices: 2054--2086  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       2044 TATAATCTGC

                                                  
       2054 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT

       2087 GCTTTGCTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55


Consensus pattern (6 bp):   
TTTAGA

Done.