Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010198.1 Corchorus capsularis cultivar CVL-1 contig10219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5813
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:2162 original size:6 final size:6

Alignment explanation


    Indices: 2151--2189  Score: 78
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       2141 AAAGCAAAGC

                                                         
       2151 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       2190 GCAAATTAAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31


Consensus pattern (6 bp):   
AAATCT

Found at i:3135 original size:10 final size:10

Alignment explanation


    Indices: 3120--3144  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       3110 GAGGACTCTA

                      
       3120 GAATTTTCTG
          1 GAATTTTCTG

                      
       3130 GAATTTTCTG
          1 GAATTTTCTG

                 
       3140 GAATT
          1 GAATT

       3145 GTGCAGGGAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.