Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010199.1 Corchorus capsularis cultivar CVL-1 contig10220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90433
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:1659 original size:24 final size:25
Alignment explanation
Indices: 1627--1678 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
1617 TCTTTCCAAC
*
1627 ACCAAAATCAAATCTGGG-TTCTGT
1 ACCAAAATCAAATATGGGTTTCTGT
*
1651 ACCAAAATCAATTATGGGTTTCTGT
1 ACCAAAATCAAATATGGGTTTCTGT
1676 ACC
1 ACC
1679 TGACAGATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (25 bp):
ACCAAAATCAAATATGGGTTTCTGT
Found at i:23438 original size:12 final size:12
Alignment explanation
Indices: 23421--23455 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
23411 CTTTAGAAAA
23421 TATTTTCCTTGG
1 TATTTTCCTTGG
* *
23433 TATTTTCCATAG
1 TATTTTCCTTGG
23445 TATTTTCCTTG
1 TATTTTCCTTG
23456 ACAACAAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.57
Consensus pattern (12 bp):
TATTTTCCTTGG
Found at i:25404 original size:22 final size:22
Alignment explanation
Indices: 25379--25929 Score: 185
Period size: 22 Copynumber: 25.6 Consensus size: 22
25369 ATGATCCCAT
25379 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
* ** *
25401 TATGAAATTTTAATAACGATAC
1 TATGAAATTTTGATAACCTTCC
* * **
25423 TAT-AGAATTTCGAGAACCTTTT
1 TATGA-AATTTTGATAACCTTCC
* * *
25445 TAT-AAATTTT-TTAAACCTACT
1 TATGAAATTTTGAT-AACCTTCC
* *
25466 TATGAAATTTTGTTAACCTCCC
1 TATGAAATTTTGATAACCTTCC
* * *
25488 TAAGGAATTTTGA-ACACC-TCAA
1 TATGAAATTTTGATA-ACCTTC-C
25510 TATGAAATTTTGATAA-CTTCCC
1 TATGAAATTTTGATAACCTT-CC
* * **
25532 AATGAAATTTTGATAATCAACAC
1 TATGAAATTTTGATAACCTTC-C
* * *
25555 TATTAGATGTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * * *
25576 ATATGATATATTGATAACC-ACGT
1 -TATGAAATTTTGATAACCTTC-C
* * *
25599 TATGAAAATTT-AAAACCCTTCA
1 TATGAAATTTTGATAA-CCTTCC
* * *
25621 TATGAATTGTTTG-TAATC-ACAC
1 TATGAAAT-TTTGATAACCTTC-C
* * * *
25643 TCTGGAATTTTGATAATC-ACAC
1 TATGAAATTTTGATAACCTTC-C
*
25665 TATGAAA--TTG-TGACC-TCAC
1 TATGAAATTTTGATAACCTTC-C
*
25684 TATGAAATTTTGATAAATCTTCC
1 TATGAAATTTTGAT-AACCTTCC
* *
25707 TATAAAATTTTGATAAACCTCCC
1 TATGAAATTTTGAT-AACCTTCC
* * *
25730 TAAGAAATTTTGATAACTTTCT
1 TATGAAATTTTGATAACCTTCC
*
25752 TAATGAAATATTGATAA-----C
1 T-ATGAAATTTTGATAACCTTCC
*
25770 TA-CAAATTTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
**
25790 TTATGATTTTTTGATAA----CC
1 -TATGAAATTTTGATAACCTTCC
* *
25809 -ATGAAATTTTGTTAATCTTCC
1 TATGAAATTTTGATAACCTTCC
* *
25830 AATGAAATTTTGATAATCC-TCT
1 TATGAAATTTTGATAA-CCTTCC
* **
25852 TATGAAATTTTGA-AAACTGAAC
1 TATGAAATTTTGATAACCT-TCC
*
25874 TATGAAATTTTGATAACCTTCA
1 TATGAAATTTTGATAACCTTCC
*
25896 TATGAAATTTTGATATCC-TCC
1 TATGAAATTTTGATAACCTTCC
*
25917 -CTGAAATTTTGAT
1 TATGAAATTTTGAT
25930 TACTCAATAA
Statistics
Matches: 393, Mismatches: 96, Indels: 82
0.69 0.17 0.14
Matches are distributed among these distances:
16 11 0.03
17 13 0.03
18 1 0.00
19 15 0.04
20 17 0.04
21 38 0.10
22 218 0.55
23 78 0.20
24 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:25714 original size:23 final size:23
Alignment explanation
Indices: 25677--25745 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
25667 TGAAATTGTG
* *
25677 ACCTCACTATGAAATTTTGATAA
1 ACCTCCCTATAAAATTTTGATAA
* *
25700 ATCTTCCTATAAAATTTTGATAA
1 ACCTCCCTATAAAATTTTGATAA
25723 ACCTCCCTA-AGAAATTTTGATAA
1 ACCTCCCTATA-AAATTTTGATAA
25746 CTTTCTTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 1 0.03
23 38 0.97
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.36
Consensus pattern (23 bp):
ACCTCCCTATAAAATTTTGATAA
Found at i:25759 original size:23 final size:23
Alignment explanation
Indices: 25685--25770 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
25675 TGACCTCACT
*
25685 ATGAAATTTTGATAAATCTTCCT-
1 ATGAAATTTTGATAACT-TTCCTA
* * *
25708 ATAAAATTTTGATAAACCTCCCTA
1 ATGAAATTTTGAT-AACTTTCCTA
*
25732 A-GAAATTTTGATAACTTTCTTA
1 ATGAAATTTTGATAACTTTCCTA
*
25754 ATGAAATATTGATAACT
1 ATGAAATTTTGATAACT
25771 ACAAATTTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
22 8 0.16
23 40 0.78
24 3 0.06
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (23 bp):
ATGAAATTTTGATAACTTTCCTA
Found at i:25766 original size:46 final size:46
Alignment explanation
Indices: 25677--25768 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
25667 TGAAATTGTG
* *
25677 ACCTCACTATGAAATTTTGATAAATCTTCCTATAAAATTTTGATAA
1 ACCTCACTAAGAAATTTTGATAAATCTTCCTATAAAATATTGATAA
* * * *
25723 ACCTCCCTAAGAAATTTTGATAACT-TTCTTAATGAAATATTGATAA
1 ACCTCACTAAGAAATTTTGATAAATCTTCCT-ATAAAATATTGATAA
25769 CTACAAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 4 0.10
46 35 0.90
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (46 bp):
ACCTCACTAAGAAATTTTGATAAATCTTCCTATAAAATATTGATAA
Found at i:25816 original size:39 final size:39
Alignment explanation
Indices: 25732--25845 Score: 99
Period size: 39 Copynumber: 2.9 Consensus size: 39
25722 AACCTCCCTA
* * *
25732 AGAAATTTTGATAACTTTCTTAATGAAATATTGATAACT
1 AGAAATTTTGATAACCTCCTTAATGAAATATTGATAACC
* ** *
25771 ACAAATTTTGATAACCTCCTT-ATGATTTTTTGATAACC
1 AGAAATTTTGATAACCTCCTTAATGAAATATTGATAACC
* * *
25809 ATGAAATTTTGTTAATCTTCC--AATGAAATTTTGATAA
1 A-GAAATTTTGATAA-CCTCCTTAATGAAATATTGATAA
25846 TCCTCTTATG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
38 14 0.23
39 42 0.70
40 4 0.07
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (39 bp):
AGAAATTTTGATAACCTCCTTAATGAAATATTGATAACC
Found at i:26173 original size:21 final size:22
Alignment explanation
Indices: 26010--26409 Score: 126
Period size: 22 Copynumber: 18.0 Consensus size: 22
26000 AGAAATACCA
*
26010 CTATGAAATTTTTG-TAATCATAT
1 CTATGAAA-TTTTGATAATC-TCT
* * *
26033 -TTTGAAAATTTGATAACCTCT
1 CTATGAAATTTTGATAATCTCT
* * * * * *
26054 TTATAAAATTTTGTTGACCCCT
1 CTATGAAATTTTGATAATCTCT
* *
26076 CCATGAAATTATGATAAT-TACAT
1 CTATGAAATTTTGATAATCT-C-T
* * *
26099 -TATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCTCT
* * * *
26120 GTTTGAAATTTTGATAA-CAACA
1 CTATGAAATTTTGATAATC-TCT
*
26142 CTATGAAATTTTGATAATCTTT
1 CTATGAAATTTTGATAATCTCT
26164 CTAT-AAATTTTGATAATCCGATCT
1 CTATGAAATTTTGATAAT-C--TCT
* *
26188 CTATGAAATTTCGATAATCACT
1 CTATGAAATTTTGATAATCTCT
* *
26210 CTATGAGA-TTTGATAACCT-T
1 CTATGAAATTTTGATAATCTCT
* * *
26230 CTATCAAATTTTGGTACTC-CT
1 CTATGAAATTTTGATAATCTCT
* *
26251 -TATGAAATTGAGACTTTTATAA-CTTT
1 CTATGAAA-T-----TTTGATAATCTCT
* * *
26277 CATATGAAATTTTGATAACCACA
1 C-TATGAAATTTTGATAATCTCT
* * *
26300 CTATAAAATTTTGATAACCTCC
1 CTATGAAATTTTGATAATCTCT
* * *
26322 CAATGAAATATT-AGTAACCTC-
1 CTATGAAATTTTGA-TAATCTCT
* * * *
26343 CTAATGAAATTTTGTTAACCACA
1 CT-ATGAAATTTTGATAATCTCT
* *
26366 CTATGAAATTCTT-ATAACCTCG
1 CTATGAAATT-TTGATAATCTCT
* *
26388 CTATGACATTTTGATATTCTCT
1 CTATGAAATTTTGATAATCTCT
26410 TTGATAACCT
Statistics
Matches: 277, Mismatches: 70, Indels: 61
0.68 0.17 0.15
Matches are distributed among these distances:
20 13 0.05
21 41 0.15
22 180 0.65
23 9 0.03
24 7 0.03
25 13 0.05
26 6 0.02
27 1 0.00
28 7 0.03
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (22 bp):
CTATGAAATTTTGATAATCTCT
Found at i:26472 original size:22 final size:22
Alignment explanation
Indices: 26440--26504 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
26430 TTGTGATAAT
*
26440 TAACCACCCTATGAAATTTCAA
1 TAACCAACCTATGAAATTTCAA
* * *
26462 TAACCAACCTAAGAGATTTTAA
1 TAACCAACCTATGAAATTTCAA
*
26484 TAACCTGATCCTATGAAATTT
1 TAACC--AACCTATGAAATTT
26505 TGGTAACCAC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 23 0.68
24 11 0.32
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (22 bp):
TAACCAACCTATGAAATTTCAA
Found at i:26533 original size:68 final size:66
Alignment explanation
Indices: 26440--26581 Score: 151
Period size: 68 Copynumber: 2.1 Consensus size: 66
26430 TTGTGATAAT
* * * *
26440 TAACCACCCTATGAAATTTCAATAACCAACCT-AAGAGATTTTAATAACCTGATCCTATGAAATT
1 TAACCACACTATGAAATTTCAATAACC-ACCTCAAGAAATTATAATAA--TCATCCTATGAAATT
*
26504 TTGG
63 TTGA
* ** * * *
26508 TAACCACACTATGGAATTTTGATAACCTCCTCATGAAATTATAATAATCATCTTATGAAATTTTG
1 TAACCACACTATGAAATTTCAATAACCACCTCAAGAAATTATAATAATCATCCTATGAAATTTTG
26573 A
66 A
26574 TAACCACA
1 TAACCACA
26582 TAGAGACAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
66 24 0.39
67 3 0.05
68 35 0.56
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (66 bp):
TAACCACACTATGAAATTTCAATAACCACCTCAAGAAATTATAATAATCATCCTATGAAATTTTG
A
Found at i:26547 original size:22 final size:21
Alignment explanation
Indices: 26447--26578 Score: 84
Period size: 22 Copynumber: 6.0 Consensus size: 21
26437 AATTAACCAC
** *
26447 CCTATGAAATTTCAATAACCAA
1 CCTATGAAATTTTGATAACC-T
* * *
26469 CCTAAGAGATTTTAATAACCTGAT
1 CCTATGAAATTTTGATAACC---T
* *
26493 CCTATGAAATTTTGGTAACCA
1 CCTATGAAATTTTGATAACCT
*
26514 CACTATGGAATTTTGATAACCT
1 C-CTATGAAATTTTGATAACCT
* * *
26536 CCTCATGAAATTATAATAATCAT
1 CCT-ATGAAATTTTGATAA-CCT
*
26559 CTTATGAAATTTTGATAACC
1 CCTATGAAATTTTGATAACC
26579 ACATAGAGAC
Statistics
Matches: 85, Mismatches: 20, Indels: 11
0.73 0.17 0.09
Matches are distributed among these distances:
21 4 0.05
22 60 0.71
23 4 0.05
24 17 0.20
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (21 bp):
CCTATGAAATTTTGATAACCT
Found at i:26797 original size:38 final size:36
Alignment explanation
Indices: 26713--26806 Score: 129
Period size: 38 Copynumber: 2.6 Consensus size: 36
26703 ATCTAAGCTC
*
26713 AAATAGGACG-TTGGAGACAAAGACAAAGCAAAATT
1 AAATAGGACGATTGGAAACAAAGACAAAGCAAAATT
**
26748 AAATACAACGATTGGAAACAAAGACAAAAGGCAAAATT
1 AAATAGGACGATTGGAAACAAAGAC-AAA-GCAAAATT
26786 AAATAGGACGA-TGGAAACAAA
1 AAATAGGACGATTGGAAACAAA
26807 AGGTCAAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
35 8 0.16
36 13 0.25
37 13 0.25
38 17 0.33
ACGTcount: A:0.55, C:0.12, G:0.20, T:0.13
Consensus pattern (36 bp):
AAATAGGACGATTGGAAACAAAGACAAAGCAAAATT
Found at i:26957 original size:30 final size:32
Alignment explanation
Indices: 26911--26969 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
26901 GGCAATTTAG
26911 AAATATATTCTTAAAAA-AAGGGTACAATTGA
1 AAATATATTCTTAAAAATAAGGGTACAATTGA
*
26942 AAATATGTT-TTAAAAATAAGGGTACAAT
1 AAATATATTCTTAAAAATAAGGGTACAAT
26970 CAGGAAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.31
Consensus pattern (32 bp):
AAATATATTCTTAAAAATAAGGGTACAATTGA
Found at i:45462 original size:17 final size:17
Alignment explanation
Indices: 45440--45475 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
45430 GTGTCAATAG
45440 TTAATTTTCTAAATGTT
1 TTAATTTTCTAAATGTT
45457 TTAATTTTCTAAATGTT
1 TTAATTTTCTAAATGTT
45474 TT
1 TT
45476 GTTTATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (17 bp):
TTAATTTTCTAAATGTT
Found at i:47393 original size:31 final size:31
Alignment explanation
Indices: 47355--47436 Score: 155
Period size: 31 Copynumber: 2.6 Consensus size: 31
47345 GTTCTTTTTT
47355 GTACACGTGGCATGCCACGTGGCATTTTTGG
1 GTACACGTGGCATGCCACGTGGCATTTTTGG
*
47386 GTACACGTAGCATGCCACGTGGCATTTTTGG
1 GTACACGTGGCATGCCACGTGGCATTTTTGG
47417 GTACACGTGGCATGCCACGT
1 GTACACGTGGCATGCCACGT
47437 CAAATGCCTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.27
Consensus pattern (31 bp):
GTACACGTGGCATGCCACGTGGCATTTTTGG
Found at i:47599 original size:18 final size:18
Alignment explanation
Indices: 47576--47613 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
47566 AATGGTACAT
47576 ATGTATCCGCGTTTGAAA
1 ATGTATCCGCGTTTGAAA
47594 ATGTATCCGCGTTTGAAA
1 ATGTATCCGCGTTTGAAA
47612 AT
1 AT
47614 TCGTTAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (18 bp):
ATGTATCCGCGTTTGAAA
Found at i:51617 original size:6 final size:6
Alignment explanation
Indices: 51606--51630 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51596 TGGAAGGTCC
51606 GGCGTT GGCGTT GGCGTT GGCGTT G
1 GGCGTT GGCGTT GGCGTT GGCGTT G
51631 TGGGTGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.52, T:0.32
Consensus pattern (6 bp):
GGCGTT
Found at i:66671 original size:185 final size:179
Alignment explanation
Indices: 66340--66697 Score: 554
Period size: 185 Copynumber: 2.0 Consensus size: 179
66330 AAACAAATCA
* *
66340 TTTTTTTTGTTGGATTATTTATTAAATGATCCTCAACTTTTATAATTTATGCTATTTAATCGTTA
1 TTTTTTTTGTTGGATTATTTATTAAATGATCCTCAACTTTTATAATTTATACTATTTAATCCTTA
*
66405 CAATTATATGTTGAACGATTGAATGTTTCGGCTTTAATTGTTTTTTTTTCTATTTGACCGATCAA
66 CAATTATAGGTTGAACGATTGAATGTTTCGGCTTTAATTGTTTTTTTTTCTATTTGACCGATCAA
* * *
66470 GGTGATTCAGGTGTCTATTTAAAGGTAATTTCATGGTCTACAATCACTT
131 GGTGATTCAAGTGTCTAATTAAAGGTAATTCCATGGTCTACAATCACTT
66519 TTTTTTTTGTTGGATTATTTATTAAATGATCCTCATACTTTTATAATTTATACTATTTAATCACT
1 TTTTTTTTGTTGGATTATTTATTAAATGATCCTCA-ACTTTTATAATTTATACTATTTAATC-CT
* * * * *
66584 TACAATTATGGGTTGGACGATTTAATGTTTCGGCTTTAATTCTTTTACTTTTTTTCTATTTGACT
64 TACAATTATAGGTTGAACGATTGAATGTTTCGGCTTTAA-T-TGTT--TTTTTTTCTATTTGACC
*
66649 GATCAAGGTGATTCAAGTGTCTAATTATAGGTAATTCCATGGTCTACAA
125 GATCAAGGTGATTCAAGTGTCTAATTAAAGGTAATTCCATGGTCTACAA
66698 CTTTCATGAA
Statistics
Matches: 161, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
179 35 0.22
180 25 0.16
181 36 0.22
182 1 0.01
183 3 0.02
185 61 0.38
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (179 bp):
TTTTTTTTGTTGGATTATTTATTAAATGATCCTCAACTTTTATAATTTATACTATTTAATCCTTA
CAATTATAGGTTGAACGATTGAATGTTTCGGCTTTAATTGTTTTTTTTTCTATTTGACCGATCAA
GGTGATTCAAGTGTCTAATTAAAGGTAATTCCATGGTCTACAATCACTT
Found at i:84779 original size:1 final size:1
Alignment explanation
Indices: 84773--84805 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
84763 TCAAATTTGT
84773 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
84806 TTGACAAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:89715 original size:11 final size:11
Alignment explanation
Indices: 89701--89738 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
89691 ATTCATAACA
89701 AATTTATAATT
1 AATTTATAATT
89712 AATTTATAATT
1 AATTTATAATT
89723 -ATTTGATAATT
1 AATTT-ATAATT
*
89734 TATTT
1 AATTT
89739 TATATAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.16
11 17 0.68
12 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
AATTTATAATT
Done.