Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000102.1 Corchorus capsularis cultivar CVL-1 contig00102, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1462
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28


Found at i:733 original size:15 final size:15

Alignment explanation


    Indices: 713--741  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        703 CCAAGTCTAG

                           
        713 AAGCCCTAATCAATC
          1 AAGCCCTAATCAATC

                          
        728 AAGCCCTAATCAAT
          1 AAGCCCTAATCAAT

        742 GCCATGATCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.41, C:0.31, G:0.07, T:0.21


Consensus pattern (15 bp):   
AAGCCCTAATCAATC
Done.