Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010206.1 Corchorus capsularis cultivar CVL-1 contig10227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38640

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5144--5178
2
17.5
2
100
0
70
48
0
0
51
1.00
6572--6716
46
3.1
46
85
4
184
38
14
15
31
1.87
6740--6791
25
2.1
25
100
0
104
46
7
7
38
1.61
8254--8283
2
15.0
2
100
0
60
50
0
0
50
1.00
8586--8637
21
2.5
21
81
6
61
38
9
11
40
1.74
10401--10470
13
5.4
13
69
19
56
54
2
2
40
1.30
11360--11439
42
1.9
41
89
2
124
16
26
35
22
1.95
12874--12901
2
14.0
2
100
0
56
50
0
0
50
1.00
13972--14180
60
3.5
60
89
2
321
33
17
14
34
1.90
15312--15338
2
13.5
2
100
0
54
51
0
0
48
1.00
16232--16281
24
2.1
24
81
7
57
38
2
0
60
1.09
21866--22405
22
24.7
22
68
12
215
36
15
9
39
1.79
22152--22236
23
3.7
23
81
7
93
38
12
7
41
1.71
22530--22901
22
16.9
22
69
12
199
33
16
9
39
1.82
22507--22698
44
4.4
44
72
9
142
33
13
9
43
1.77
22987--23049
22
2.9
22
80
0
81
41
17
9
31
1.82
23385--23444
31
1.9
31
83
12
79
46
0
15
38
1.45
30244--30272
14
2.1
14
100
0
58
55
20
6
17
1.65
35479--35508
15
1.9
16
93
6
53
80
0
16
3
0.85
37578--37627
24
2.1
24
100
0
100
48
20
0
32
1.50

Tables:   1

The End!