genome.fa.s10210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010210.1 Corchorus capsularis cultivar CVL-1 contig10231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105976

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454--1148	197	3.5	195	84	8	811	34	12	17	35	1.88
6579--6638	31	1.9	31	86	6	86	35	16	3	45	1.64
6813--6850	19	2.0	20	85	15	53	28	5	2	63	1.30
7015--7190	44	4.0	42	81	8	172	35	10	16	36	1.84
7013--7197	22	8.3	22	73	7	140	34	10	17	37	1.84
7233--7372	22	6.4	21	72	11	88	37	9	18	34	1.83
7237--7332	44	2.2	44	81	7	106	35	9	20	34	1.85
7423--7473	25	2.2	24	82	10	61	43	13	9	33	1.77
7456--7627	22	7.8	22	72	6	89	42	11	12	33	1.78
7703--7761	20	3.0	20	97	0	109	40	10	22	27	1.85
7709--8021	22	14.6	21	71	15	137	40	9	15	34	1.80
7724--7866	66	2.2	64	82	8	173	41	9	16	32	1.80
7724--8210	44	11.2	44	69	15	223	38	10	16	35	1.82
8245--8298	22	2.4	23	81	9	67	50	5	9	35	1.58
8498--8530	14	2.3	15	89	5	50	63	0	27	9	1.24
8611--8654	21	2.1	21	100	0	88	13	25	9	52	1.70
8860--8979	58	2.1	58	98	0	231	55	10	10	25	1.64
11244--11300	26	2.2	26	80	0	69	66	7	8	17	1.41
12980--13055	31	2.4	31	80	12	84	42	6	22	28	1.78
14269--14671	133	3.0	133	95	1	727	20	12	23	42	1.87
25638--26102	42	10.9	42	80	13	495	18	27	24	30	1.97
25638--26102	90	5.4	90	84	10	550	18	27	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25885--25944	30	2.0	30	96	0	111	16	25	30	28	1.97
25837--25986	78	2.0	72	88	7	219	16	26	27	30	1.96
25747--26076	162	2.0	164	87	5	479	17	27	25	29	1.98
51861--51902	18	2.3	19	80	12	52	45	0	21	33	1.52
79615--79848	125	1.9	122	89	2	360	36	21	13	28	1.91
83768--83832	29	2.2	29	83	0	76	40	10	12	36	1.78
85223--85283	31	2.0	31	93	0	104	27	19	6	45	1.75

Tables:   1

The End!