Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010213.1 Corchorus capsularis cultivar CVL-1 contig10234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39233

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3541--3578
20
2.0
20
89
5
60
26
7
13
52
1.67
16808--16868
24
2.3
26
81
16
81
37
31
0
31
1.58
16934--17042
34
3.1
34
83
12
155
45
11
13
28
1.79
16934--17047
39
3.1
38
87
8
164
45
12
13
28
1.79
18590--18630
2
20.0
2
90
5
64
48
2
2
46
1.28
18766--18798
13
2.5
13
90
0
57
39
0
15
45
1.46
19048--19074
2
13.5
2
100
0
54
48
0
0
51
1.00
21002--21051
23
2.1
24
85
3
66
64
12
14
10
1.51
21675--21715
17
2.4
18
80
12
50
43
7
0
48
1.30
24136--24493
179
2.0
177
96
1
653
26
11
13
47
1.77
25138--25280
74
1.9
74
95
0
259
22
30
6
39
1.80
25287--25325
20
1.9
21
94
5
71
30
0
10
58
1.31
28562--28730
84
2.0
84
97
0
320
34
24
18
22
1.96
30774--30807
11
3.0
11
86
4
50
0
23
0
76
0.79
33745--33813
37
1.9
35
91
5
111
24
5
23
46
1.74
38146--38199
27
2.0
27
96
0
99
37
9
12
40
1.76
38799--38842
22
2.0
22
82
8
54
38
11
6
43
1.67
38798--38939
60
2.3
60
92
2
230
32
14
9
44
1.76
38975--39021
22
2.2
21
85
7
60
27
14
4
53
1.60
39003--39233
22
10.5
22
69
13
91
38
16
10
35
1.83

Tables:   1

The End!