Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010216.1 Corchorus capsularis cultivar CVL-1 contig10237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75323

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1840--1953
39
3.1
39
85
10
166
28
13
12
45
1.79
1845--1953
34
3.1
34
88
6
146
28
13
11
45
1.79
2019--2079
24
2.3
26
78
16
72
29
0
32
37
1.58
14915--15189
109
2.5
109
90
7
414
38
11
1
48
1.50
14915--15203
108
2.6
108
88
8
399
37
10
2
49
1.49
33207--33244
2
19.0
2
100
0
76
50
0
0
50
1.00
39028--39320
109
2.6
109
91
4
444
36
11
1
50
1.48
41410--41448
17
2.5
15
88
12
53
56
2
0
41
1.13
41827--42282
22
20.6
22
66
11
101
36
14
9
40
1.78
42094--42312
44
5.0
43
74
7
179
35
15
8
40
1.79
42094--42303
66
3.2
64
77
9
190
35
14
9
40
1.78
42388--42602
22
9.7
22
70
14
90
33
13
11
41
1.80
42642--42781
22
6.4
21
74
10
102
36
18
8
36
1.82
42642--42999
44
8.2
44
69
16
158
36
18
9
35
1.83
42817--43000
22
8.3
22
75
10
106
38
18
9
33
1.84
42824--42934
46
2.5
44
82
10
127
38
18
9
33
1.83
43166--43203
19
2.0
20
85
15
53
63
2
5
28
1.30
43329--43375
25
2.0
23
88
12
69
53
0
8
38
1.32
43403--43468
31
2.1
31
88
0
96
46
3
19
30
1.65
45787--45829
22
1.9
23
90
4
70
37
11
4
46
1.61
50107--50149
22
1.9
23
90
4
70
37
11
4
46
1.61
55036--55066
3
10.3
3
100
0
62
67
0
32
0
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55884--55947
23
2.8
23
80
0
74
35
18
9
35
1.83
55675--56055
22
17.5
22
68
10
111
35
16
10
37
1.82
56110--56160
19
2.6
20
87
6
77
25
19
11
43
1.85
56241--56478
44
5.4
44
75
7
173
34
13
10
42
1.79
56285--56413
66
2.0
66
81
3
152
34
14
10
40
1.80
56239--56479
22
11.0
21
71
14
89
34
14
10
41
1.79
56241--56407
88
1.9
88
81
4
203
34
14
10
41
1.79
56266--56572
22
13.8
22
69
18
113
34
14
10
41
1.80
56533--56583
22
2.3
22
82
0
66
41
19
7
31
1.80
56638--56667
12
2.5
12
94
0
51
33
10
10
46
1.71
56745--56829
22
3.9
22
75
6
82
37
14
10
37
1.80
56998--57040
19
2.2
20
84
16
54
62
0
6
30
1.21
57620--57655
2
19.5
2
83
16
51
44
0
0
55
0.99
62294--62383
31
3.2
31
62
31
83
38
4
13
43
1.64
62283--62389
53
2.0
53
98
0
205
38
3
14
43
1.63
66781--66806
2
13.0
2
100
0
52
50
0
0
50
1.00
71490--71519
7
4.4
7
91
8
53
0
0
13
86
0.57
71491--71540
6
8.3
6
84
10
50
0
4
16
80
0.87
71490--71519
13
2.2
13
94
5
51
0
0
13
86
0.57
71491--71548
11
5.5
10
76
15
55
1
3
15
79
0.95
74221--74319
51
1.9
52
91
6
166
47
15
10
27
1.77

Tables:   1

The End!