Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001022.1 Corchorus capsularis cultivar CVL-1 contig01022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17110
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:1111 original size:45 final size:45

Alignment explanation


    Indices: 1047--1136  Score: 162
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       1037 GGTCTTAAAT

                    *                                    
       1047 AGGACCACGTTCATCCAAAAAAGAGTCACTTAATTTGTGACTGAG
          1 AGGACCACATTCATCCAAAAAAGAGTCACTTAATTTGTGACTGAG

                                        *                
       1092 AGGACCACATTCATCCAAAAAAGAGTCAGTTAATTTGTGACTGAG
          1 AGGACCACATTCATCCAAAAAAGAGTCACTTAATTTGTGACTGAG

       1137 GGAGTAATTT


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45   43  1.00

ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24


Consensus pattern (45 bp):   
AGGACCACATTCATCCAAAAAAGAGTCACTTAATTTGTGACTGAG
Done.