Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010222.1 Corchorus capsularis cultivar CVL-1 contig10243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108154

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4133--4176
22
2.0
22
86
8
63
40
11
4
43
1.61
4459--4560
23
4.5
23
78
8
93
40
14
7
37
1.75
4476--4582
45
2.4
45
78
9
110
37
14
8
39
1.77
4191--4770
22
26.6
22
68
13
159
35
15
10
39
1.80
4852--5088
22
10.7
22
68
16
93
34
13
10
41
1.78
4896--5122
22
10.4
22
72
10
144
33
14
10
41
1.80
5357--5419
22
2.8
23
76
4
67
39
14
9
36
1.78
5764--5840
38
2.1
36
85
7
102
57
11
16
14
1.66
5940--6005
31
2.1
31
83
5
80
45
4
19
30
1.70
6136--6164
14
2.1
14
100
0
58
13
27
17
41
1.87
14259--14327
35
2.0
35
94
0
120
24
18
36
20
1.95
14612--14645
6
5.7
6
96
0
59
88
0
11
0
0.52
15291--15325
14
2.5
14
95
0
61
48
14
0
37
1.44
17048--17098
26
2.0
26
92
0
84
50
15
15
17
1.78
17114--17142
13
2.2
13
100
0
58
51
17
13
17
1.76
24969--25005
18
2.1
18
89
0
56
45
8
27
18
1.77
29704--29733
2
15.0
2
100
0
60
50
0
0
50
1.00
34101--34178
40
1.9
41
84
2
104
29
23
16
30
1.96
36255--36294
2
20.0
2
100
0
80
0
50
0
50
1.00
42116--42145
14
2.1
14
93
0
51
43
3
0
53
1.17
42272--42665
211
1.9
211
84
2
531
31
15
15
36
1.90
42615--42741
66
1.9
66
91
0
209
31
14
18
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42681--43027
165
2.1
167
84
2
450
30
14
15
39
1.88
50073--50204
45
2.9
45
91
4
212
28
19
29
21
1.98
68072--68115
21
2.1
21
86
0
61
20
38
9
31
1.84
85767--85799
6
5.5
6
100
0
66
84
0
15
0
0.61
89459--89493
18
1.9
18
88
0
52
74
0
14
11
1.08
103418--103494
38
2.0
38
97
0
145
28
23
11
36
1.90
104025--104084
22
2.7
22
89
0
93
51
1
20
26
1.56
107128--108143
399
2.6
389
82
6
1234
35
17
13
33
1.90
107130--108152
200
5.2
198
78
8
1102
35
17
14
33
1.90

Tables:   1

The End!