Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010223.1 Corchorus capsularis cultivar CVL-1 contig10244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1852
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39


Found at i:441 original size:18 final size:18

Alignment explanation


    Indices: 420--456  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        410 AATTTGAGAC

                               
        420 TATAGTATA-ATTAATATA
          1 TATA-TATATATTAATATA

                              
        438 TATATATATATTAATATA
          1 TATATATATATTAATATA

             
        456 T
          1 T

        457 TAGAGTAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17    4  0.22
  18   14  0.78

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (18 bp):   
TATATATATATTAATATA

Found at i:1651 original size:17 final size:17

Alignment explanation


    Indices: 1629--1662  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1619 GTAGACTTTC

                             
       1629 TTAATTAATTTGTTTGA
          1 TTAATTAATTTGTTTGA

                  *          
       1646 TTAATTGATTTGTTTGA
          1 TTAATTAATTTGTTTGA

       1663 AGAAATTATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59


Consensus pattern (17 bp):   
TTAATTAATTTGTTTGA
Done.