genome.fa.s10224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010224.1 Corchorus capsularis cultivar CVL-1 contig10245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73069

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560--603	16	2.9	15	86	6	61	45	2	6	45	1.42
568--597	11	2.6	11	94	5	51	46	0	10	43	1.37
1473--1523	22	2.3	22	79	0	57	58	3	13	23	1.52
5976--6065	35	2.6	35	100	0	180	26	16	5	51	1.67
9867--9924	28	2.1	28	100	0	116	36	3	6	53	1.45
10232--10388	74	2.1	74	90	0	242	21	26	10	42	1.84
12532--12561	15	1.9	16	93	6	53	36	16	0	46	1.47
15395--15428	2	17.5	2	93	6	61	52	0	0	47	1.00
15693--15726	6	5.7	6	93	6	52	0	0	11	88	0.52
15690--15727	12	3.2	12	88	0	58	0	0	13	86	0.56
15986--16024	2	19.0	2	89	5	60	48	5	0	46	1.24
23584--23811	121	1.9	122	84	7	311	30	11	17	39	1.86
24519--24554	17	2.1	18	94	5	65	8	11	0	80	0.90
25520--25555	6	6.0	6	86	0	54	16	11	66	5	1.40
25520--25555	18	2.0	18	100	0	72	16	11	66	5	1.40
25710--25794	42	2.0	43	95	2	154	36	10	10	42	1.74
27027--27209	98	1.9	98	87	2	269	28	20	15	35	1.93
27688--28243	216	2.6	216	98	0	1058	21	20	19	38	1.93
28775--28925	77	2.0	77	93	0	257	22	19	17	41	1.91
29272--29316	24	1.9	23	86	4	63	20	13	31	35	1.91
29678--30007	64	5.2	64	87	0	482	24	24	22	28	1.99
29664--30004	127	2.7	126	89	1	502	24	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29664--30007	191	1.8	191	88	0	526	24	24	22	28	1.99
30018--31048	76	12.8	76	72	15	614	27	21	12	38	1.90
30075--31420	158	8.4	159	75	14	984	27	21	12	37	1.90
30237--30677	243	1.8	233	87	4	657	28	19	13	38	1.89
30545--30724	83	2.2	84	90	1	281	28	24	12	35	1.91
30706--30730	8	3.1	8	100	0	50	24	52	12	12	1.72
30733--31048	80	4.1	77	87	6	351	26	21	12	38	1.90
31038--31072	8	4.4	8	100	0	70	25	48	11	14	1.77
31157--31472	77	4.1	78	87	1	422	27	20	12	39	1.89
35414--35456	23	1.9	22	85	4	59	32	2	6	58	1.38
35414--35467	22	2.4	23	81	3	65	31	1	9	57	1.41
35950--36032	22	3.8	22	79	3	87	40	12	12	34	1.79
35949--36041	22	4.2	23	75	8	77	37	10	13	37	1.80
36123--36167	22	2.2	20	84	8	54	40	4	13	42	1.64
40536--40584	21	2.3	21	96	3	89	26	24	16	32	1.96
41442--41472	1	31.0	1	100	0	62	0	0	0	100	0.00
41784--41841	28	2.1	28	100	0	116	20	6	34	37	1.80
45711--45760	20	2.5	20	83	9	57	4	22	2	72	1.12
51655--51741	44	2.0	43	84	2	111	28	26	16	28	1.97
52188--52921	158	4.6	158	83	4	840	34	13	13	38	1.84
55835--57982	333	6.6	330	77	8	1805	37	14	13	33	1.86
58525--58568	21	2.2	20	83	4	52	61	6	9	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58670--58702	2	16.5	2	93	0	57	48	0	3	48	1.17
63915--65741	338	5.5	338	74	11	1226	38	15	13	33	1.86
65867--66289	115	3.7	115	90	3	660	30	23	24	21	1.99
66967--66992	11	2.4	11	100	0	52	38	15	0	46	1.46
67083--67214	62	2.2	62	86	2	169	36	15	14	33	1.88
67438--68590	332	3.5	325	78	8	1017	36	15	14	33	1.89
69886--69926	20	2.0	20	85	0	55	58	21	4	14	1.55
72051--72427	108	3.5	108	77	10	326	39	14	14	31	1.86
71937--72448	66	7.9	65	76	7	416	39	14	14	31	1.86
71937--72448	22	23.6	22	76	6	373	39	14	14	31	1.86

Tables:   1

The End!