Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010225.1 Corchorus capsularis cultivar CVL-1 contig10246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51334

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46--119
29
2.5
30
82
4
105
33
16
32
17
1.92
6559--6599
19
2.2
19
86
4
57
24
4
7
63
1.40
6652--6692
15
2.7
15
88
11
57
43
0
2
53
1.13
7756--10075
333
7.0
331
80
6
2202
33
14
14
37
1.87
13816--13969
77
2.0
77
97
0
290
28
11
24
35
1.91
29034--29071
6
6.2
6
96
3
67
50
0
50
0
1.00
29028--29071
18
2.4
19
88
7
72
50
0
47
2
1.13
33139--33187
17
2.9
17
78
9
55
6
6
18
69
1.31
33139--33185
16
2.7
18
77
12
53
6
6
14
72
1.25
34036--34101
31
2.1
31
85
0
87
27
18
7
46
1.75
34501--34541
21
1.9
21
85
5
55
29
7
4
58
1.46
34513--34555
19
2.1
21
84
16
56
27
6
2
62
1.33
34898--35036
22
6.3
22
72
12
79
31
10
19
38
1.85
35136--35187
22
2.4
22
80
0
59
34
7
17
40
1.78
35150--35201
22
2.4
21
81
9
52
40
5
13
40
1.68
35224--35453
22
10.5
22
74
9
139
41
10
14
33
1.80
35285--35475
44
4.4
44
74
5
156
43
9
12
34
1.75
35574--35738
22
7.5
22
70
10
113
42
9
14
33
1.77
35574--35738
44
3.8
44
75
10
149
42
9
14
33
1.77
35743--35822
23
3.5
23
82
1
90
41
3
15
40
1.64
35851--35910
22
2.7
22
79
5
68
36
15
11
36
1.83
35969--36029
30
2.0
30
93
0
104
31
14
13
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36020--36112
22
4.3
22
73
5
82
46
8
10
34
1.69
44830--44906
37
2.1
37
100
0
154
53
27
2
16
1.57
44847--44910
20
3.3
20
65
12
62
57
26
1
14
1.46
44913--45138
118
1.9
118
95
0
407
32
21
21
24
1.98
49474--49506
6
5.5
6
100
0
66
33
0
0
66
0.92
50705--50785
41
1.9
43
90
5
130
43
2
7
46
1.45
50712--50785
28
2.6
27
74
6
67
44
2
8
44
1.47
51098--51135
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!