Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010226.1 Corchorus capsularis cultivar CVL-1 contig10247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44143

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
386--428
21
2.0
22
86
4
61
37
6
34
20
1.80
12116--12143
2
14.0
2
100
0
56
50
0
0
50
1.00
13102--13207
37
2.9
37
100
0
212
20
16
11
51
1.74
13134--13198
21
3.3
21
64
27
61
23
18
12
46
1.82
13631--13827
97
2.0
97
94
0
340
43
13
16
26
1.85
14132--14172
18
2.2
18
86
8
55
34
9
19
36
1.85
34301--34326
12
2.2
12
100
0
52
69
7
23
0
1.14
37210--37248
3
13.0
3
94
0
69
33
0
2
64
1.08
38016--38070
24
2.2
25
93
6
94
54
14
0
30
1.41
40362--40396
2
17.5
2
100
0
70
48
0
0
51
1.00
42348--42375
2
14.0
2
100
0
56
50
0
0
50
1.00
42452--42517
31
2.1
31
88
0
96
27
18
6
48
1.71
42788--42867
22
3.6
22
73
9
74
35
12
16
36
1.86
42839--42917
22
3.6
22
89
0
122
35
16
15
32
1.90
43011--43141
22
6.0
22
68
13
74
35
10
19
34
1.86
43152--43396
22
11.3
22
71
17
122
42
9
13
34
1.77
43226--43264
21
2.0
19
85
14
53
46
5
7
41
1.55
43232--43396
44
3.8
43
75
13
153
42
9
12
35
1.75
43503--43569
19
3.5
19
89
2
98
43
10
20
25
1.84
43560--44118
22
25.7
22
67
15
125
39
9
14
37
1.77
43533--44118
44
13.5
44
68
13
218
39
9
15
36
1.78
43750--43853
23
4.6
23
79
3
95
38
7
13
40
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43903--43988
45
1.9
45
83
4
111
33
11
16
38
1.85

Tables:   1

The End!