Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010230.1 Corchorus capsularis cultivar CVL-1 contig10251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3264
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:1704 original size:46 final size:46

Alignment explanation


    Indices: 1638--1734  Score: 160
    Period size: 46  Copynumber: 2.1  Consensus size: 46

       1628 GCTAGGAATT

                                                          
       1638 TTAGA-ATAGAAAAATAATGAGAGGGTTAATCTATATTTATAGACA
          1 TTAGACATAGAAAAATAATGAGAGGGTTAATCTATATTTATAGACA

                       *                 *             *  
       1683 TTAGACATAGAGAAATAATGAGAGGGTTACTCTATATTTATAGGCA
          1 TTAGACATAGAAAAATAATGAGAGGGTTAATCTATATTTATAGACA

                  
       1729 TTAGAC
          1 TTAGAC

       1735 TGCCACGTCA


Statistics
Matches: 48,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  45    5  0.10
  46   43  0.90

ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31


Consensus pattern (46 bp):   
TTAGACATAGAAAAATAATGAGAGGGTTAATCTATATTTATAGACA
Done.