Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010232.1 Corchorus capsularis cultivar CVL-1 contig10253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95867

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1715--1749
2
18.0
2
88
5
54
51
2
0
45
1.16
2156--2210
28
1.9
29
92
3
94
47
9
12
30
1.73
4194--4329
68
2.0
68
98
0
263
41
5
19
33
1.75
7339--7369
2
15.5
2
100
0
62
51
0
0
48
1.00
10455--10479
2
12.5
2
100
0
50
52
0
0
48
1.00
10645--10693
21
2.3
21
100
0
98
28
38
20
12
1.89
10702--10743
22
1.9
22
85
0
57
42
21
16
19
1.89
11314--11352
2
19.0
2
94
5
69
48
0
2
48
1.15
26421--26452
2
16.5
2
93
6
57
46
0
0
53
1.00
31209--31237
2
14.5
2
100
0
58
51
48
0
0
1.00
31765--31832
31
2.2
31
89
0
100
45
26
11
16
1.81
58730--58781
22
2.4
22
78
9
54
36
11
5
46
1.64
58796--58985
22
8.9
22
66
14
76
34
15
11
38
1.82
59054--59381
22
15.1
22
70
12
117
36
15
8
40
1.77
59111--59190
23
3.5
23
82
1
99
38
12
6
42
1.68
59089--59360
44
6.2
46
72
13
146
36
14
8
41
1.76
59067--59365
66
4.6
66
72
13
199
36
14
8
40
1.76
59326--59402
23
3.6
21
82
12
77
32
15
10
41
1.81
59508--59900
22
17.6
22
65
14
99
34
16
9
39
1.81
59637--59701
21
2.9
22
79
11
69
35
13
7
43
1.73
62262--62533
108
2.5
107
91
5
413
48
1
11
38
1.51
70754--70848
34
3.0
31
77
8
109
26
17
28
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85611--85692
37
2.2
37
100
0
164
40
20
20
18
1.92
94416--94510
48
2.0
46
93
4
163
16
29
10
43
1.82

Tables:   1

The End!