Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010235.1 Corchorus capsularis cultivar CVL-1 contig10256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59046

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3275--3322
24
2.0
24
91
0
78
37
8
6
47
1.59
4921--4980
20
3.0
20
87
2
84
33
18
0
48
1.48
6545--6583
17
2.3
17
95
0
69
25
5
41
28
1.77
6932--7292
156
2.3
155
78
7
367
35
18
15
30
1.92
19145--19185
18
2.3
18
95
4
75
58
0
0
41
0.98
19204--19263
30
2.0
31
83
9
79
31
25
13
30
1.93
19587--19613
13
2.1
13
100
0
54
44
0
0
55
0.99
37092--37152
30
2.0
30
96
0
113
31
36
9
22
1.87
49520--49638
43
2.8
43
94
0
202
47
12
35
5
1.64
51610--51648
21
1.9
21
94
5
71
38
15
2
43
1.60
55968--56034
35
2.0
35
91
5
111
28
11
13
46
1.79

Tables:   1

The End!