Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010237.1 Corchorus capsularis cultivar CVL-1 contig10258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18128
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33


Found at i:5154 original size:13 final size:13

Alignment explanation


    Indices: 5138--5185  Score: 51
    Period size: 13  Copynumber: 3.5  Consensus size: 13

       5128 GAAAACAAAT

                        *
       5138 ATAAATTAAATAT
          1 ATAAATTAAATAA

                            
       5151 ATAATAATTAAATGAA
          1 AT-A-AATTAAAT-AA

               *         
       5167 ATAGATTAAATAA
          1 ATAAATTAAATAA

                  
       5180 ATAAAT
          1 ATAAAT

       5186 CAATAAAAGG


Statistics
Matches: 29,  Mismatches: 3, Indels: 6
        0.76            0.08        0.16

Matches are distributed among these distances:
  13    9  0.31
  14    8  0.28
  15    9  0.31
  16    3  0.10

ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33


Consensus pattern (13 bp):   
ATAAATTAAATAA

Found at i:12580 original size:2 final size:2

Alignment explanation


    Indices: 12575--12604  Score: 51
    Period size: 2  Copynumber: 14.5  Consensus size: 2

      12565 TATATACTTT

                                                        
      12575 TA TA TA TA TGA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T

      12605 TATCTACTCG


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   25  0.93
   3    2  0.07

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.