Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010238.1 Corchorus capsularis cultivar CVL-1 contig10259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58045

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10162--10187
2
13.0
2
100
0
52
50
0
0
50
1.00
24961--25030
15
4.6
15
71
7
52
18
30
18
32
1.95
25021--25051
16
1.9
16
93
0
53
35
29
9
25
1.88
39836--39944
54
2.0
54
96
0
200
41
19
15
23
1.90
51260--51429
60
2.9
58
81
5
198
34
15
19
30
1.93
51471--51623
60
2.5
60
83
0
189
32
14
15
37
1.87
53041--53711
135
4.7
140
87
9
972
51
4
8
35
1.53
53263--53309
14
3.4
14
70
5
51
59
2
8
29
1.39
53175--53711
149
3.7
149
88
8
872
51
4
8
35
1.52
52990--53711
284
2.5
284
97
0
1363
51
4
8
35
1.52
53547--53593
14
3.4
14
70
5
51
59
2
8
29
1.39
54199--54250
27
1.9
27
96
0
95
48
7
15
28
1.73
55192--55266
34
2.4
31
77
16
82
41
20
4
34
1.71
56308--56605
150
2.0
147
93
4
510
36
10
21
31
1.87

Tables:   1

The End!