Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001024.1 Corchorus capsularis cultivar CVL-1 contig01024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2037
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32


Found at i:1904 original size:29 final size:29

Alignment explanation


    Indices: 1852--1909  Score: 89
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1842 CGTGATTCAG

                            *  *         
       1852 GACTAAACTTAAATTATAATTTACTCTAA
          1 GACTAAACTTAAATTACAAGTTACTCTAA

                        *                
       1881 GACTAAACTTAACTTACAAGTTACTCTAA
          1 GACTAAACTTAAATTACAAGTTACTCTAA

       1910 CTACGACTAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34


Consensus pattern (29 bp):   
GACTAAACTTAAATTACAAGTTACTCTAA
Done.