Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010240.1 Corchorus capsularis cultivar CVL-1 contig10261, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18843
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:9662 original size:15 final size:15

Alignment explanation


    Indices: 9642--9671  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       9632 ATCAGGCTGC

                      *    
       9642 CACGATACACGATAT
          1 CACGATACACAATAT

                           
       9657 CACGATACACAATAT
          1 CACGATACACAATAT

       9672 TTCAACCGAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20


Consensus pattern (15 bp):   
CACGATACACAATAT

Found at i:15108 original size:15 final size:15

Alignment explanation


    Indices: 15088--15117  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      15078 ATCAGGCTGC

                      *    
      15088 CACGATACACGATAT
          1 CACGATACACAATAT

                           
      15103 CACGATACACAATAT
          1 CACGATACACAATAT

      15118 TTCAACCGAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20


Consensus pattern (15 bp):   
CACGATACACAATAT

Found at i:18182 original size:27 final size:27

Alignment explanation


    Indices: 18144--18197  Score: 81
    Period size: 27  Copynumber: 2.0  Consensus size: 27

      18134 TTTCACAACA

                  *          **        
      18144 AAATTTTATTTCTTAACTTAATTTTCT
          1 AAATTTCATTTCTTAACAGAATTTTCT

                                       
      18171 AAATTTCATTTCTTAACAGAATTTTCT
          1 AAATTTCATTTCTTAACAGAATTTTCT

      18198 TAAAAGAATT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.31, C:0.13, G:0.02, T:0.54


Consensus pattern (27 bp):   
AAATTTCATTTCTTAACAGAATTTTCT

Found at i:18196 original size:14 final size:14

Alignment explanation


    Indices: 18179--18208  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

      18169 CTAAATTTCA

                    *     
      18179 TTTCTTAACAGAAT
          1 TTTCTTAAAAGAAT

                          
      18193 TTTCTTAAAAGAAT
          1 TTTCTTAAAAGAAT

              
      18207 TT
          1 TT

      18209 ATAAAATAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47


Consensus pattern (14 bp):   
TTTCTTAAAAGAAT
Done.