genome.fa.s10242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010242.1 Corchorus capsularis cultivar CVL-1 contig10263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130719

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6355--6382	13	2.2	13	100	0	56	78	7	7	7	1.09
5766--6936	333	3.5	330	75	10	1089	37	15	12	33	1.86
7133--7714	308	1.9	309	87	3	870	35	15	15	33	1.89
7399--9666	340	6.7	333	75	8	1818	37	14	13	34	1.86
7412--9666	673	3.3	664	75	10	1753	37	14	13	34	1.86
9938--11154	331	3.6	332	80	7	1313	37	14	13	33	1.86
11826--11929	2	53.5	2	69	19	60	40	5	4	49	1.48
11857--11927	15	5.3	13	77	19	67	42	7	0	50	1.29
11877--11926	5	9.6	5	81	14	57	42	4	0	54	1.19
11857--11929	26	2.6	28	85	14	98	42	6	0	50	1.29
12451--12488	14	2.6	14	91	4	58	2	60	0	36	1.11
15009--15122	44	2.7	43	83	6	135	31	11	17	39	1.85
16335--16359	13	1.9	13	100	0	50	0	16	0	84	0.63
17435--17487	3	17.7	3	100	0	106	33	0	0	66	0.92
17471--17678	105	2.0	104	94	4	366	35	11	11	41	1.78
18737--18765	15	1.9	15	100	0	58	55	13	0	31	1.39
22739--22794	16	3.6	16	70	2	51	12	21	8	57	1.62
22737--22806	31	2.2	32	82	2	97	11	18	7	62	1.50
26001--26036	2	18.0	2	100	0	72	50	0	0	50	1.00
29774--29830	30	1.9	30	85	0	78	31	10	26	31	1.90
30313--30339	1	27.0	1	100	0	54	0	0	0	100	0.00
53573--53602	1	30.0	1	100	0	60	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57239--57268	7	4.4	7	91	8	53	13	0	0	86	0.57
57240--57268	13	2.2	13	100	0	58	13	0	0	86	0.58
63461--63673	31	7.0	31	83	3	236	35	26	20	17	1.95
63464--63673	91	2.3	92	85	4	282	36	26	20	16	1.94
64947--65004	29	2.0	29	82	0	71	22	13	13	50	1.77
65587--65643	28	2.0	28	89	0	87	43	19	17	19	1.88
77767--77795	1	29.0	1	100	0	58	0	0	0	100	0.00
79169--79245	3	25.7	3	89	0	100	41	33	24	0	1.55
79169--79281	27	4.3	27	86	3	142	42	36	21	0	1.53
79178--79257	18	4.4	18	87	0	97	45	33	21	0	1.52
79184--79272	12	7.7	12	77	7	67	46	35	17	0	1.49
79169--79257	12	7.4	12	85	0	106	43	33	22	0	1.53
89747--89919	86	2.0	87	96	3	323	23	6	26	42	1.79
91342--91375	7	4.9	7	92	0	59	32	41	26	0	1.56
100745--100778	14	2.3	15	90	5	52	47	2	2	47	1.32
108462--108503	21	2.0	21	100	0	84	57	4	4	33	1.41
108826--108867	21	2.0	22	85	4	59	9	28	28	33	1.88
108916--109041	15	8.5	15	69	24	72	51	1	2	44	1.24
108915--108963	21	2.5	19	87	9	64	46	0	0	53	1.00
108938--109041	39	2.5	42	80	15	135	52	1	2	42	1.27
108934--109044	13	8.8	13	67	31	55	52	1	2	43	1.26
108943--109049	41	2.7	36	76	23	101	51	1	2	43	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115517--115720	105	1.9	105	80	3	232	40	15	10	33	1.82
119223--119248	2	13.0	2	100	0	52	50	0	0	50	1.00
121013--121068	28	2.1	27	84	12	80	30	8	17	42	1.80
122890--122932	21	2.0	21	86	9	59	51	2	30	16	1.57
124839--124865	2	13.5	2	100	0	54	51	0	0	48	1.00
125906--125941	2	18.0	2	88	0	54	44	0	0	55	0.99
125905--125941	16	2.3	16	100	0	74	43	0	0	56	0.99
126296--126674	205	1.9	204	99	0	749	43	26	11	18	1.84
126918--127369	149	3.0	151	89	3	694	51	3	9	35	1.52
127447--127479	17	1.9	17	93	0	57	30	24	24	21	1.99
128608--128693	35	2.5	35	94	0	145	39	16	13	30	1.87
128608--128706	35	2.8	35	87	3	101	41	17	13	28	1.86
129281--129336	23	2.3	23	87	12	76	73	0	26	0	0.84
129288--129337	22	2.3	20	83	16	64	72	0	28	0	0.86

Tables:   1

The End!